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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGgttagcacatgtgcttttgttttacactttcaagtttcagttttgttactgtagaatttgattctgtttgccaagttagttatgcgattgatgttattccttatatatatacatatgtatatgtatatgtatatatatattttttggtgttatgcag

Basic information

species Glycine max
transcript GLYMA05G25980.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25980.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0003g03080.t01 (Vitis vinifera), 5'ss of exon 2
GCATATACATGGACGAAATCAAAACCCTAATCAACCTCAAGCGCCACCGCCTTATCGTCAACATCTCCGATCTCCACAACTTCCGC---GACTTGGGTAACAGgttagcacatgtgcttttgttttacactttcaagtttcagttttgttactgtagaatttgattctgtttgccaagttagttatgcgattgatgttattccttatatatatacatatgtatatgtatatgtatatatatattttttggtgttatgcag
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---TTTACATCGATGAAATCAAAGCCATGATCAACCACAAGCGCCATCGCCTCATCCTTAACATTTCCGATCTCCATGACTACCGCACTGACTTAGCCCACAGgtttcctttt-cacttctcttttccattct----tctgggttttttt-----tggattt-attttatttgc---gtt--tcatttggttcctcataatcgcgggaaaaaaagaaag-----------------------------------------