Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATGCTCTTTCTTTTACATGAGGATCAGTAATGTCTACATTGTCATTGTTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcaccatttctacctataattcacctttatctgagatgaaggttttgttggggtgctgcttgtgcatgactttcttctatctagcttataactat...

Basic information

species Glycine max
transcript GLYMA05G23670.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G46630.2 (Arabidopsis thaliana), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGTAATGTCTACATTGTCATTGTTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcaccatttctacctataattcacctttatctgagatgaaggttttg-ttggggtgctgcttgtgcatgactttcttctatctagcttata-actat-------------------
||| ||||| ||  |||| ||| | ||||| ||||||||||| |||||||||||||| | ||| || ||||| ||||| |  ||||| |||||||||||||||       | || |   | |  ||||  || || |   |  |  |||||| ||   || |   ||      || |    |  ||       | | |||                     
TGGCTGCTCCTTTGTTTATATGCGAATCAGCAATGTCTACATCGTCATTGTTGTCAGTAGCAATGCTAATGTTGCTTGTGGATTCAAATTTGTTGTTGAGgtaa------acttgtttttgtgtttcattttaatattccacaattgttttgattcttgttcaaatttcaagagagtcagattgattctatacacatactgcttttgattcacattttcag

upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ22278 (Selaginella moellendorffii), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGTAATGTCTACATTGTCATTGTTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcaccatttctacctataattcacctttatctgagatgaaggttttgttggggtgctgcttgtgcatgactttcttctatctagcttataactat
||||||||| ||| | |||||| ||||||| |||||||||||||| || || ||||||| ||| |||||||  || || ||| |||| |||||||| |||||  | |||  ||   |  | |  ||   |||  ||| | |    | |  | |      | || || | ||                             
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTTGTGGAGgt-ctacact-ttcagagattttgtttctcttgttcttaaactttgctcctttct---cgttggtttttcacag--------------------------

upper sequence: GLYMA05G23670.2 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25669 (Selaginella moellendorffii), 5'ss of exon 2
TGGATGCTCTTTCTTTTACATGAGGATCAGTAATGTCTACATTGTCATTGTTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcaccatttctacctataattcacctttatctgagatgaaggttttgttggggtgctgcttgtgcatgactttcttctatctagcttataactat
||||||||| ||| | |||||| ||||||| |||||||||||||| || || ||||||| ||| |||||||  || || ||| |||| ||||| || |||||  | | |  ||   |  | |  ||   |||  ||| | |    | |  | |      | || || | ||                             
TGGATGCTCCTTCCTCTACATGCGGATCAGCAATGTCTACATTGTGATCGTCGTCAGCAGCAATGCCAATGCTGCCTGTGCTCTCAAATTTGTCGTGGAGgt-ctacgct-ttcagagattttgtttctcttgttcttaaactttgctcctttct---cgttggtttttcacag--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105632980|gb|DW246601.1|DW246601
EST:     TTGTCAGCAACAACGCCAATGTCGCTCGCGCTTTCAAGTTTGTTGTTGAG                         GCTGTTGCATTGTTCCGATCATACTTTGGTGGAGCTTTTGACGAGGATGCA
genomic: TTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcacc ... tttcttccagGCTGTTGCATTGTTCCGATCATACTTTGGTGGAGCTTTTGACGAGGATGCA
EST: gi|151413117|gb|EV282925.1|EV282925
EST:     TTGTTAGCAACAATGCCAATGTTGCTTGCGCTTTCAAGTTTGTTGTTGAG                         GCTGTTGCATTGTTCCGATCATACTTTGGTGGAGTTTTTGACGAGGATGCA
genomic: TTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcacc ... tttcttccagGCTGTTGCATTGTTCCGATCATACTTTGGTGGAGCTTTTGACGAGGATGCA
EST: gi|21887371|gb|BQ740584.1|BQ740584
EST:     TTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAG                         GCTGTTGCATTGTTCCGATCATACTTTG
genomic: TTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcacc ... tttcttccagGCTGTTGCATTGTTCCGATCATACTTTG
EST: gi|24136425|gb|BU926935.1|BU926935
EST:     TTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAG                         GCTGTTGCATTGTTCCGATCATACTTTGGTGGA
genomic: TTGTCAGCAACAACGCCAATGTCGCTTGCGCTTTCAAGTTTGTTGTTGAGgtattgcacc ... tttcttccagGCTGTTGCATTGTTCCGATCATACTTTGGTGGA