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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGCGAACAATGTGGCAGGCACCAGgtaatgatgctgcattctgtttttttttttttttttttgcttatgtaataatgtttcgtatttggatgatgtgtgattgccttaactatgttaatttgga...

Basic information

species Glycine max
transcript GLYMA05G21800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G21800.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 5'ss of exon 2
GATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGCGAACAATGTGGCAGGCACCAGgtaatgatgctgcattctgtttttttttttttttttttgcttatgtaataatgtttcgtatttggatgatgtgtgattgcc-ttaactatgttaatttgga
||| ||||| || || || ||||||||||| || |||||| | || || |||||||| |||||||| || ||   ||| |||||||||||||  |||||||||||||||  ||  |   | |     | || | | |||  |  ||  ||| ||| |  |||| ||   | | | || |   || |  |            
GATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGTGAACAATGTGGCAAACACCAGgtaatgatg--gctctagatatccaaatcttgtgtcttgtct-cgtg-taaagttgcaaattttgaaactttcttatggttattgatcag-----------

upper sequence: GLYMA05G21800.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 5'ss of exon 2
GATCGGTACTCCTCCGCAGATGTTTGCTCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACTTGCGAACAATGTGGCAGGCACCAGgtaatg-atgctgcattctgtttttttttttttttttttgcttatgtaataatgtttcg--tatttggatgatgtgtgattgccttaactatgttaatttgga
|||||| || || || ||||  ||||| |||||||||||||||||||| ||| ||||||||||||| ||||| || ||||| || |||||||  |||||||| ||  |  || || |   |   ||||||| |  |     | |   | |||| | |    | ||||| |  ||  |  |||  | |   ||  | |||    
GATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGCGAGCAGTGTGGCAAACACCAGgtgatatactcttcaattcctacatttttttatgatgaatttcagaaattaatttatgagttgtttggtttttggatt-ttgtttcagtaattatcattgt--