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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCTCTTCTACTGGGTGGTCCTATTCTCACTTACAATGAGGAGACAGATATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaacatcttcattgggcataattattgtcatagactcatggttttgtatggcttggtccattttttggtgttcttaacataattacatctttgttgctaatggtaaagatttggttttatttattttacttttag

Basic information

species Glycine max
transcript GLYMA05G20940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G20940.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g00030.t01 (Vitis vinifera), 5'ss of exon 2
ACTCCTCTTCTACTGGGTGGTCCTATTCTCACTTACAATGAGGAGACAGATATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaacatcttcattgggcataattattgtcatagactcatggttttgtatggcttggtccattttttggtgttcttaacataattacatctttgttgctaatggtaaagatttggttttatttattttacttttag
|||||| ||||||||| |||| || ||| | || || |||||||||||||||   |||||||| |||||||||||| | || || || | |||||||||||||  |||  | |||| ||     |||   |||| ||    ||||  ||||||   ||||       | ||||      |||     || | ||| ||   | |  ||    | |||   || ||||| ||          
ACTCCTTTTCTACTGGATGGTACTGTTCACTCTCACCATGAGGAGACAGATAATGCACATGATCAAATACAAATATGTTCCTTTCTCCTTTGGAAAACAGgtatcctataaccttc-ttaattttaaac-ttgtgatga--tcata-ttttgtgctgctt---ttgctctttg------ttattgggatcatatcctta--gtttttgaactaaattcatttctatttcttag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017620|gb|CX704362.1|CX704362
EST:     TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
genomic: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
EST: gi|208178246|gb|GD976533.1|GD976533
EST:     TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
genomic: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
EST: gi|33389247|gb|CA852454.1|CA852454
EST:     ATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGNAAATCACAAGCCTTTCAGAGGA
genomic: ATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAG-AAATCACAAGCCTTTCAGAGGA
EST: gi|58014302|gb|CX701044.1|CX701044
EST:     TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAG                         CGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC
genomic: TATCTCACATGATTAAATACAAATATTTACCGTTTTCATCTGGAAAACAGgtaaactaac ... ttacttttagCGCTATGATGTAAAGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGAC