1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAGgttctgttctgcttattattgtttttgttgttatttggcgttgtggaattaggaattggaggcacaagcctgttttgtggctgatcagtatcactgtgtc...
species | Glycine max |
transcript | GLYMA05G14170.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAG GTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAGEST: gi|17518821|gb|BM187863.1|BM187863
genomic: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAGgttctgttct ... ttgtgtgtagGTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAG
EST: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAG GTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAGEST: gi|298194816|gb|HO043288.1|HO043288
genomic: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAGgttctgttct ... ttgtgtgtagGTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAG
EST: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAG GTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAGEST: gi|18690841|gb|BM519689.1|BM519689
genomic: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAGgttctgttct ... ttgtgtgtagGTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAG
EST: CAATATTACAATTCAAAAG GTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAGEST: gi|298169723|gb|HO021083.1|HO021083
genomic: CAATATTACAATTCAAAAGgttctgttct ... ttgtgtgtagGTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAG
EST: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAG GTATGGTAGAGAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAG
genomic: GGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAGgttctgttct ... ttgtgtgtagGTATGGTAGAAAGTGATCCAGAAGGTGCGCTTGCTGGTTTTGCTCAGGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGACATGGAGGACTACGGTTTCGAGTACTCCGATGAGGAGGAAGTGGAGCAAGACGTTGATATCGAGAATCAATATTACAATTCAAAAGgttctgttctgcttattattgtttttgttgttatttggcgttgtggaattaggaattggaggcacaagcctgttttgtggctgatcagtatcactgtgtc
- - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA