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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttatatttttctagggttttatttaaaaaacggtttgcggccgagtttttggtcacaacgtcaaggtttttggagtgtccacgaccgcaattgcc...

Basic information

species Glycine max
transcript GLYMA05G09460.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttatatttttctagggttttatttaaaaaacggtttgcggccgagtttttggtcacaacg--tcaaggtttttggagtgtccacgaccgcaattgcc---
||||||||||||||  ||||||| ||||||||||| || ||  |||| |||||||| ||||||||||||||||||||    |||| |   |   | | ||  ||      | || || |   | || ||  ||||    |  | |  |||| |   ||||        | ||| |     
ATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGTTTAAAGAGgtataatataatacaccttgatgtttctt------ctgtgtgtgtttgtgtattaagtcagtgtggtttagagtttgttttgtgtgtgtttttgtaatggtttag

upper sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G66880.1 (Arabidopsis thaliana), 5'ss of exon 2
ATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttatatttttctagggttttatttaaaaaacggtttgcggccgagttt-ttggtcacaacgtcaaggtttttggagtgtccacgaccgcaattgcc
||||||||||||||  | ||||| || || || |||||||| || ||||||||||| ||||| || ||||||||||| |  | |||     |    | ||   ||     |  ||||        |      || ||    | ||  | | |    ||| |  ||    |      
ATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAGgtaaaatttatacactt---ttcttcagtacttgtctttttggaatttgttaagccagtgactcttttaaactctgtttcttgtacttgaggatag-----

upper sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 2
ATTGATGAAAATGTGAAGAGGGAAATTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttatatttttctagggttttatttaaaaaacggtttgcggccgagtttt-tggtcacaacgtcaaggtttttggagtgt-ccacgaccgcaattgcc
||||||||||||||  | |||||||| || ||||| |||||||| ||||| || |||||||||||||||||||||||| | |   || || |    | | ||||| |||| | | | |   | ||  |  ||  |||  | |   |  |  ||  | || | |       ||||   
ATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAGgtttgatcatttcttatcttttataatttataaaatgctattctttccagcatggtgaccacc-cattctgactgatgctgggtgctatttttcaaattaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7640623|gb|AW734850.1|AW734850
EST:     TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG                         GTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
genomic: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttata ... tttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
EST: gi|7685757|gb|AW756405.1|AW756405
EST:     TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG                         GTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
genomic: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttata ... tttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
EST: gi|120495545|gb|EH223712.1|EH223712
EST:     TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAG                         GTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG
genomic: TTATCAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGGTTTAAAGAGgttagttata ... tttcacgcagGTAATTTTAACACCTACTCATCTTGCTATTGTAATGGAATATGCATCTGGG