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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGgtaattactagtataacacctattacccttcttgtggtttaaataacacttcaatctcaagagtatttatcagtttggtttctataacccacatagtttt...

Basic information

species Glycine max
transcript GLYMA05G04250.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G04250.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G178998_T01 (Zea mays), 5'ss of exon 4
GACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGgtaattacta--------gtataacacct--attacccttctt-gtggtttaaataacacttcaatctcaagagtatttatcagtttggtttctata-acccacatagtttt-
||| || || || |||||||| || || || |||||||||||||| || ||||||||||| |||||  | || || || ||  | ||||||| | | || |||| |  ||         || || || |  |||| || | |  | |   ||     |  ||   | |      | | || ||     | |  |||  |  ||  |  ||   
GACACTGGTTTTCTACAAAGGCCGGGCGCCCAATGGACAGAAGTCAGACTGGATCATGCACGAGTATCGCCTGGAGACCAACAACAATGGAATTCCACATgtaagttgtacagatcctctagaatacatgcattatccatgtcagcgtcctacgcgtccgttagttattccacctgtctaacaaa--agctcgtatgcatgcatgtcattcag

upper sequence: GLYMA05G04250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G12260.1 (Arabidopsis thaliana), 5'ss of exon 3
GACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGgtaattactagtataacacc----tattacccttcttgtggtttaaataacacttcaatctcaagagtatttatcagtt--tggtttc---tataacccac-atagtttt------------------------------------
 || || ||||||||||| ||| |||||||||||||||| |||||||||||||||||||| || ||| |  |||||||  ||||||| |||||| |||||||| ||| ||  | ||| |      |||||   |||       | | |  ||  |  ||   ||      | || |  |  | ||| |   ||| | |  | | | |  |                                    
AACACTTGTGTTTTACAAGGGAAGAGCCCCAAATGGACAAAAGTCTGATTGGATCATGCACGAATACCGCTTAGAAACCGATGAAAACGGAACTCCTCAGgta-ttaatataacaaccctaaaacattacttctctataaaagttagttgcatgtttatactaaacaatctcattatatgatagttgcatatatgatctcctaaaatcatttgaggtaatctcattaaatgatatttgggttgtag

upper sequence: GLYMA05G04250.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G62700.1 (Arabidopsis thaliana), 5'ss of exon 2
GACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGgtaattactagtataacacctattacccttcttgtggtttaaataacacttcaatctcaagagtattt-atcagtttggtttctataaccca-catagtttt--
 || || ||||||||||||||| ||||||||||||| ||||| || |||||||||||||| || ||  |  ||||||| | ||||||||||||  ||||||||  ||     ||   | |||   | || | |     |||| | | |||  | |  ||  || | || | |      || | ||  | |   | ||  | |  
AACACTTGTGTTTTACAAAGGAAGAGCCCCAAATGGTCAGAAATCCGATTGGATCATGCACGAATATCGCTTAGAAACAAGTGAAAATGGAACCCCTCAGgta--tatatacattg-atctaaggcgct-catacatcttaactcatactctatttgcataaggagttgagcttccctgtatatacgatctttcttaagtatgt

upper sequence: GLYMA05G04250.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0154g00020.t01 (Vitis vinifera), 5'ss of exon 2
GACTCTCGTGTTTTACAAAGGACGAGCCCCAAATGGACAGAAGTCTGATTGGATCATGCATGAGTACAGACTAGAAACTAATGAAAATGGAACTTCTCAGgtaatta-ctag--tataacacctattaccct--tcttgtggtttaaataacacttcaatctcaagagtatttatcagtttggtttctataacccacatagtttt---
     | || ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||| || ||| |||||| || || |||   | ||| |  ||| | | |  |  |||||||||   |||  |  || ||       || ||| |||||  |||  |   |   ||| |   |   
----TTAGTCTTTTACAAAGGTCGAGCCCCAAATGGACAAAAGTCAGATTGGATCATGCATGAGTATCGACTGGAAACAAATGAAAACGGGACTCCTCAGGCAAgtaactaaactgtaaaatgtatgatcttaattgtgtggtttatcaaactgtgaaaact---atccatatat-agttttattttcacttcattcattgcaatgct