1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACTGAGAATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAGgtaaccaagttatcgacctaaaaaatttgattatcgatattagttcatgaaagaagttttctttgcattacgtgcccccaagtctagaacacatggcaag...
species | Glycine max |
transcript | GLYMA05G04160.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAG GGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGACEST: gi|21677977|gb|BQ630328.1|BQ630328
genomic: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAGgtaaccaagt ... aaatgaacagGGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGAC
EST: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAG GGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGACEST: gi|15813432|gb|BI785707.1|BI785707
genomic: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAGgtaaccaagt ... aaatgaacagGGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGAC
EST: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAG GGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGACEST: gi|298173390|gb|HO016726.1|HO016726
genomic: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAGgtaaccaagt ... aaatgaacagGGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGAC
EST: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAG GGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGAC
genomic: ATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAGgtaaccaagt ... aaatgaacagGGAGTAGACATGTTTGGAAAGCGCATTGGGTTTCTCAAGTTCAAAGCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGAATCCTCTTTATTCAAGCAGTGGTTGCATAACTTGCAAACTGAGAATGGGATTCTAGCTGATGGTACCATGACTCTCAGACAAGTTCGAATTCAGgtaaccaagttatcgacctaaaaaatttgattatcgatattagttcatgaaagaagttttctttgcattacgtgcccccaagtctagaacacatggcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccaa