1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCAAGTCTAGCTGGAACAGTTAACTGGGGCACAGCAACTGTTGTTGGAGTATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttatgagtaaaaatatgcttcaaaactctgctttatatagaattttgaaagtgtactatgttcaacacagaaaaggtcattaaaagtaaagaca...
species | Glycine max |
transcript | GLYMA05G02350.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGTEST: gi|15199727|gb|BI423979.1|BI423979
genomic: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttat ... atgttactagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGT
EST: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACCGAAGACAAACGTEST: gi|209717182|gb|BW657647.1|BW657647
genomic: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttat ... atgttactagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGT
EST: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGTEST: gi|16346106|gb|BI971701.1|BI971701
genomic: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttat ... atgttactagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGT
EST: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTT AGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGT
genomic: TATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttat ... atgttactagAGCAAGGATGCAGAAGTTATGTTGAAACTTGGGAGCACTGAAGACAAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAAGTCTAGCTGGAACAGTTAACTGGGGCACAGCAACTGTTGTTGGAGTATTTGCTGGCATGTTATATGGCGGTAGCAAGGAGGCAGCTGCTTCTGTTgtaagtttatgagtaaaaatatgcttcaaaactctgctttatatagaattttgaaagtgtactatgttcaacacagaaaaggtcattaaaagtaaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa