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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAATTGGTGGAGACACTATCTCCGTCACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcgttatcatttaatgtctgtttggaggagcttatggggagcttatttgagcttataaaaatagctg...

Basic information

species Glycine max
transcript GLYMA05G01930.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g12780.1 (Oryza sativa), 5'ss of exon 2
CCCAATTGGTGGAGACACTATCTCCGTCACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcgttatcatttaatgtctgtttggaggagcttatggggagcttatttgagcttataaaaatagctg---------------------------------------------
||||||||| |||||||| ||||| ||||| ||||||||||||||  | || ||||| || || ||||| |||||||| || || |||||||| || ||||||    |   | |||   |      || | |||   ||| ||||    | |  | |    || || |      ||  || ||  |  |   ||||                                                 
CCCAATTGGAGGAGACACGATCTCAGTCACAAGTGGTGTTGTATCTAGAATAGAGATACTTTCATATGTTCATGGTTCAACGGAGCTTCTAGGATTGCAGgtttttctcttaagatctttgcatgcttttgattgtctat-attttgcatattgtagacatagtttttactt--ctctttggaattatttctaataatctcttaacctgggagcatacttaagttttcactgtttcatggaacag

upper sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015959_T01 (Zea mays), 5'ss of exon 2
CCCAATTGGTGGAGACACTATCTCCGTCACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggtt-------gaaatgatta-gtcttccattgttattcgttat-----catttaatgtctgtttggaggagcttatggggagc--ttatttg--agcttataaaaatagctg------------------------
 |||||||| ||||| || || ||||| || ||||| || || ||  | || || || || || ||||| ||||||||||||||||||||||| ||||||||    ||        |||| || |   |||| | |     |  ||||      |  |  ||   ||   |   |  || || | |    | | ||    ||| |   |  |  ||                         
TCCAATTGGAGGAGATACCATATCCGTGACAAGTGGAGTGGTCTCTAGGATAGAAATACTTTCATATGTTCATGGTTCTACAGAACTTCTAGGATTACAGgtacattttttctctaaaattatgataacttcaaataaatctttttataaagatagatgttgcaagtgaagtaaatattttgagaaatcatgacttatcggctcaccgacgtgtctaatacgggccttgtcttgttaatag

upper sequence: GLYMA05G01930.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g07900.t01 (Vitis vinifera), 5'ss of exon 2
CCCAATTGGTGGAGACACTATCTCCGTCACCAGTGGTGTTGTATCACGCATTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttgaaatgattagtcttccattgttattcgttatcatttaatgtctgtttggaggagcttatggggagcttatttga-gcttataaaaatagctg
||||||||| |||||||| || || || || ||||||||||||||| | || ||||| ||||||||||| ||||| || || || ||||| ||||||||||| | |  |  |  |||  || |   |   | || |||||  ||   |   || |        || |||       |  |||| | || || |        
CCCAATTGGGGGAGACACGATTTCTGTAACAAGTGGTGTTGTATCAAGAATAGAGATCCTATCTTATGTTCATGGGTCCACTGAGCTTCTGGGTTTACAGgtcatggggtcac-atttctcctttttctcttttagttattgttggcttgttgatccatttttctgatgtctcctattcttgatggttttacag-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285317|gb|AW597804.1|AW597804
EST:     TTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAG                         ATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGACCTGCATTTAATGAC
genomic: TTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttga ... tcttttgcagATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGACCTGCATTTAATGAC
EST: gi|7284465|gb|AW597055.1|AW597055
EST:     TTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAG                         ATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGACCTGCATTTAATGAC
genomic: TTGAGATTCTATCTTATGTCCATGGTTCTACAGAACTTCTAGGTTTACAGgttaggttga ... tcttttgcagATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGACCTGCATTTAATGAC