Sequence
atgc intronic sequence ATGC exonic sequenceACTAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGgtacgcgatgttcgcactatttgttttcgttgatccattcattcgctgattccgttccgttttctgattcgtatctgtgagtttcag
Basic information
species | Glycine max |
transcript | GLYMA05G01690.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G01690.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g07550.t01 (Vitis vinifera), 5'ss of exon 2
ACTAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGgtacgcgat--gttcgcactatttgttttcgttgat--ccattcattcgctgattccgttccgttttc---tgattcgtatctgtgagtttcag-------------------
|| |||||| | || ||||||||||||| ||| ||||||| ||||||||||||||| | || |||||| ||| | | || | ||| | | || | ||| | || | || | ||| |||| | | ||| | |
ACGAACAGGACAGCAAAATTGAAGCAGTGCAAGCTCGATGCTCGCCGCGAGCAATGGCTTTCCAAAGgtatgcggttgatctctcctctctgtctctatatatgtttaggcatgcatgcatgcatttatatcttcaactgatctattattttgattccgattgatggctgttttgtacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9985972|gb|BE659978.1|BE659978EST: ATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAG GTGCGGTGAAGAGCAAGGGGTGCAAGGACGGAGTGGACGATGACGGCCACG
genomic: ATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGgtacgcgatg ... tgagtttcagGTGCGGTGAAGAGCAAGGGGTGCAAGGACGGAGTGGACGATGACGGCCACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTAACAGGTCCGCGAAATTGAAGCAGTACAAAATCGATGCGCGCCGCGAGCAATGGTTATCTCAAGgtacgcgatgttcgcactatttgttttcgttgatccattcattcgctgattccgttccgttttctgattcgtatctgtgagtttcag
- - - - - - - - - TTGAAG
- - - - - - - - - TGAAGC