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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgatttatccctctttcttactttgccctcttcattgtaaatttcattatgtataatgttagatatcagaccagatacaacatacctgttatgt...

Basic information

species Glycine max
transcript GLYMA04G43520.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812843|gb|BQ297321.1|BQ297321
EST:     GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAG                         CTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
genomic: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgat ... tgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
EST: gi|10231867|gb|BE800755.1|BE800755
EST:     GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAG                         CTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
genomic: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgat ... tgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
EST: gi|298192682|gb|HO033116.1|HO033116
EST:     GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAG                         CTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA
genomic: GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgat ... tgaatggtagCTAGCAACATCTTCCTTGGCTAGCTTGTCAAGGTTTGCATGGGGAACAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAGAGATCCTTCTCAACCACGCAATTTTACTTTCGAGgtgatttgatttatccctctttcttactttgccctcttcattgtaaatttcattatgtataatgttagatatcagaccagatacaacatacctgttatgt

- AAGAGA
- - GAGATC