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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCGGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttgctttatcttcctattctgtttttcacaaagtgtttcaattttttattttttattttttgctttggttttttgaaatctctttgctttttctccatcag

Basic information

species Glycine max
transcript GLYMA04G43340.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054062|gb|BM732729.1|BM732729
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|213619802|gb|DB967424.1|DB967424
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|7796823|gb|AW782217.1|AW782217
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|213615386|gb|DB965651.1|DB965651
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|151395197|gb|EV265068.1|EV265068
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCA-T
EST: gi|31561426|gb|CD487264.1|CD487264
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|209720190|gb|BW674528.1|BW674528
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|16104724|gb|BI892464.1|BI892464
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGTTTATAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|17023237|gb|BM094271.1|BM094271
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|8283506|gb|BE021065.1|BE021065
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
EST: gi|192305500|gb|FG994294.1|FG994294
EST:     GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAG                         ATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCATT
genomic: GGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttg ... tctccatcagATGCAGCCCAAGGATGCAGTGAGCGAATTGCAGAAAACCCATGAAGCCA-T

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTGGGACCCACCGGAATCAAACGGGTTGCTTACTGCGCAGCATCAGCGGGACCAACAACAGCTACAAGTGATCTCAGGGGATTGTGCAACCAAGAAGgtaatgtttgctttatcttcctattctgtttttcacaaagtgtttcaattttttattttttattttttgctttggttttttgaaatctctttgctttttctccatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG