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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGgtaaaaaaattgtttgtcaattctcagtctagttgcttttggaatattttctgctggttgttgcaactacttgtcttccatagtcatttttctcagcctt...

Basic information

species Glycine max
transcript GLYMA04G42430.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G42430.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g01890.1 (Oryza sativa), 5'ss of exon 4
CAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGgtaaaaaaattgtttgtcaattctcagtctagttgcttttggaatattttctgctggttgttgcaactacttgtcttccatagtcatttttctcagcctt-------
||  |||||| ||      || || || ||| | || |||||||||||||| |||||||| || || ||| | | |||||| |||||||| |||||| |||||| |   ||     | ||||   | ||| |  || ||  ||| ||       |     ||  |  || ||   || ||    |  |||  |||    |       
CAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgctt-----taaatttaaattcttgaagcattcagaacataagtacataaccattata--tatttaggttgcaggagctctttcatcactaatgttagta

upper sequence: GLYMA04G42430.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os12g01950.1 (Oryza sativa), 5'ss of exon 4
CAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGgtaaaaaaattgtt-tgtcaattctcagtctagttgcttttggaatattttctgctggttgttgcaactacttgtcttccatagtcatttttctcagcctt---
||  |||||| ||      || || || ||| | || |||||||||||||| |||||||| || || ||| | | |||||| |||||||| |||||| |||||| |   |||   | | ||||||      | |       | |  ||| | |  |    ||||||    ||   ||| |||    | ||||   ||       
CAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGgtaagacgtttgaaatttaaattcttgaagcattcagaacagaaccattatatatttag-gttgcaggagct---ctttcatcactaattttagtagaaaaaag

upper sequence: GLYMA04G42430.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G21600.2 (Arabidopsis thaliana), 5'ss of exon 4
CAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGgtaaaaaaattgtttgtcaattctcagtc---tagttgcttttggaatattttctgctggttgttgcaac-tacttgtcttccatagtcatttttctcagcctt
|   || || ||||     ||||| || |||||||||||| |||||||||| |||||||| |||||||| || |||||||| || ||||||| |||| |||||  |  | |  || ||  |||  |||    ||     | ||   | | ||     |    ||   | |  |    ||  || |||  |   |   ||     
CCGGAACAGAAGGACAAACGATCCAGAATTTGTGCTAGATCTTGAAGAGATATATGTTATTGATTCCAAGACAAAGTCAATCACCAGAGCCAGAGTTCTGgtatgactaattcttatc--ttccaagttatttaagcattattaacaaagttctcattccgagtctgagcacaaacctcaaccgtag--accatagccaattgg

upper sequence: GLYMA04G42430.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 4
CAAAAATAGGAGGAAGGGTGATCCTGAGTTTGTGCTAGATTTTGAAGAGATTTATGTTATCGATTCCAAAACCAAGTCAATTACGAGAGCCAAAGTTTTGgtaaaaaaattgttt-gtcaattctcagtct----agttgcttttggaatatt-ttctgctggttgttgcaactacttgtcttccatagtcatttttctcagcctt
||  ||| |||||  || ||| || || |||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||||| |||||| |||| | | | || ||| |   ||  | ||| |    | | | |||   |||| | ||||  || ||  ||  |  |      |   ||  |    |||||       
CAGGAATCGGAGGTTGGCTGACCCAGAATTTGTGCTCGATTTTGAGGAGATTTATGTAATCGATTCAAAAACAAAATCAATAACCAGAGCTAAAGTTGTGgtgagacactttttttggttatatttagtttccaaaatcgatttcaaaatactcttctcatgtttcgtgtgaaaaaaaaaatattatctttgaatttctt------