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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCATTCGCTCAAGGAAGAGGCTATAAGCATTCCCGACCAGAGTGCTATCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAGgtagaactgtctttctgtctatctattcggtttttgtatttgagtgcttagcggctttgacttgtttgaataaatttcttaataagcacttgtaggagaa...

Basic information

species Glycine max
transcript GLYMA04G40420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40420.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM5G801019_T01 (Zea mays), 5'ss of exon 2
TGTGCATTCGCTCAAGGAAGAGGCTATAAGCATTCCCGACCAGAGTGCTATCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAGgtagaactgtctttc--tgtctatctattcggtttttgtatttgagtgcttagcggctttgacttgtttgaataaatttcttaataagcacttgtaggagaa-
 ||||| ||||||||||| ||| | ||   ||||||||||||||  || |||||||||||||| ||||||||    || ||| ||||| | ||| ||||||||  |||| ||  |  ||     ||   |||| |   ||   || || | || |  ||  |||||||      |  |     ||  |    |||        
CGTGCACTCGCTCAAGGAGGAGACCATCCCCATTCCCGACCAGAACGCAATCACCAAGGACAACGTCACCATACAGATCGACAGCGTCATATATATCAAGgtaatactgcctccccttgctcgcctgcgcggtctacataca-gattgttgagtg--ttgcacttgttgccggtagatcagagatgggtgggtgtgacgcctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298167764|gb|HO013027.1|HO013027
EST:     TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAG                         ATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
genomic: TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAGgtagaactgt ... gggagttcagATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
EST: gi|298175979|gb|HO015384.1|HO015384
EST:     TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAG                         ATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
genomic: TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAGgtagaactgt ... gggagttcagATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
EST: gi|14259214|gb|BG882122.1|BG882122
EST:     TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAG                         ATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
genomic: TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAGgtagaactgt ... gggagttcagATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
EST: gi|151395353|gb|EV265224.1|EV265224
EST:     TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAG                         ATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT
genomic: TCACCAAGGACAATGTCACCATCATCATTGACGGCGTCCTTTATGTCAAGgtagaactgt ... gggagttcagATTGTGGATCCTAAGCTGGCGTCTTATGGGGTGGAGAATCCCATTTATGCT