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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAAGTTGAGGTAGCTCCACCACAGGCAAATGAGGTTCGTATCAAGATCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGgtaatcaattcttctaatttctcaatattactatttctctaaactataattaaaacatatgctgaaattgttaaattggatattttacag

Basic information

species Glycine max
transcript GLYMA04G39190.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209721255|gb|BW665763.1|BW665763
EST:     TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAG                         GGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
genomic: TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGgtaatcaatt ... tattttacagGGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
EST: gi|209704354|gb|BW678318.1|BW678318
EST:     TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGCGAAGCCAAG                         GGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAG
genomic: TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGgtaatcaatt ... tattttacagGGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAG
EST: gi|213597606|gb|DB964455.1|DB964455
EST:     TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAG                         GGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
genomic: TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGgtaatcaatt ... tattttacagGGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
EST: gi|209725690|gb|BW663181.1|BW663181
EST:     TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAG                         GGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
genomic: TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGgtaatcaatt ... tattttacagGGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
EST: gi|213588311|gb|DB967797.1|DB967797
EST:     TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAG                         GGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG
genomic: TCTTGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCCAAGgtaatcaatt ... tattttacagGGACAGACACCTTTATTTCCACGGATATTTGGTCACGAAGCAGGAGG