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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAACGGCGTCGCTGTTATCTCTTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGgttcctttttcgtttttcgccgttattttttttccgtttcgagccacgcgaaatgaatgagccagccgttactgcgttttccatttccaaaatctgtaacggtttttgtttcccattcag

Basic information

species Glycine max
transcript GLYMA04G38770.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38770.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G032337_T01 (Zea mays), 5'ss of exon 2
--------AGGGAACGGCGTCGCTGTTATCTC-TTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGgttccttt-ttcgtttttcgccgttattttttttccgtttcgagccacgcgaaatgaatgagccagccgttactgcgttttccatttccaaaatctgtaacggtttttgtttcccattcag
          |  || |  |    |          | | |  |  |||  ||||| |||||||||||||| |||||||||||||| || ||||| | |   |||| |   |||    |  |    ||    |        ||||||  ||  |  | |||  |  | |  || ||  |       ||  || | |||  | |           
GTTTGCTCGTGAGACTGGATGAGCGCAGCAGGGCCGCGGACTCGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgttcgctccccgctcccaaatcaaatcttact--------gcgaaaaaaa-aaatctgccactg-tacacttccctctgtttttttcgctagccgttcctct-----------

upper sequence: GLYMA04G38770.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G032337_T02 (Zea mays), 5'ss of exon 1
----------------AGGGAACGGCGTCGCTGTTATCTC-TTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGgttccttt-ttcgtttttcgccgttattttttttccgtttcgagccacgcgaaatgaatgagccagccgttactgcgttttccatttccaaaatctgtaacggtttttgtttcccattcag
                  |  || |  |    |          | | |  |  |||  ||||| |||||||||||||| |||||||||||||| || ||||| | |   |||| |   |||    |  |    ||    |        ||||||  ||  |  | |||  |  | |  || ||  |       ||  || | |||  | |           
GTTTACAGGTTTGCTCGTGAGACTGGATGAGCGCAGCAGGGCCGCGGACTCGCTCGCCTCCGTGCTCGCCGTCTACGACGGTTTCTGCAACCTCAAGCAGgtccgtccgttcgctccccgctcccaaatcaaatcttact--------gcgaaaaaaa-aaatctgccactg-tacacttccctctgtttttttcgctagccgttcctct-----------

upper sequence: GLYMA04G38770.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0044g01560.t01 (Vitis vinifera), 5'ss of exon 2
AGGGAACGGCGTCGCTGTTATCTCTTGTGAAGACATTCGATTCCGTTCTCGCCGTCTACGAAGGTTTCTGCAACCTGAAACAGgttcctttttcgtttttc-gccgttattttttttccgtttcg-----agccacgcgaaat---------gaatgagccagccgttactgcgttttcc----atttccaaaatctgtaacggtttttgtttcccattcag-----------------------------------------------------
 |||||   |||| ||  | |||||| |  | |||||  |  || ||||||| |  |||||||||||||||||| ||||||||||||  ||  |  || || |||   | | | | |  | ||||     |  |  ||||||           ||| ||     |||    || |||||     |     | |    |||| | || ||||||     |  |                                                     
GGGGAAAATCGTCCCTTCTCTCTCTTTTCGATACATTTAAAACCCTTCTCGCTGCATACGAAGGTTTCTGCAACTTGAAACAGgttcaattcgctcttctctgcctcaactctctgtttggttcgtcagaaaacgtgcgaaaacgaaaaataaaataaggttttcgtctgggctttttctgggaaaccaaatagagggtaaagcttattgtttgtttgttggtttgttcttcttttccctgtgtaattggttactgaagtgggtgaattgtttag