Sequence
atgc intronic sequence ATGC exonic sequenceAAAAGCCCCCAAAGGTGTGAAAACCAATTGGATTATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAAAAACAACAACTTGAGGgtatgtcccaaattggaatttcactaaaatctagattagtttgcttaagtgttttttaatcaaccaagcgggtctagcataaaaagttttcgtttttaat...
Basic information
species | Glycine max |
transcript | GLYMA04G38560.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G38560.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G63790.1 (Arabidopsis thaliana), 5'ss of exon 2
AAAAGCCCCCAAAGGTGTGAAAACCAATTGGATTATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAAAAACAACAACTTGAGGgtatgtcccaaattggaatttcactaaaatctagattagtttgcttaagtgttttttaatcaaccaagcgggtctagc--ataaaaagttttcgtttttaat-------
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AAAAGCTCCGAAAGGGATTAAAACGAATTGGATTATGCACGAGTATCGTCTCGCTAATGTCGATCGATCTGCTTCTACCAACAAGAAGAACAACTTAAGAgtaagctt----ttctgattt--ttaatttctgggtt--ttttttcgatttttgtgatgatgatgaattgatgatgattaatgggttttttttggttgaaattttgcag
upper sequence: GLYMA04G38560.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0031g02610.t01 (Vitis vinifera), 5'ss of exon 2
------AAAAGCCCCCAAAGGTGTGAAAACCAATTGGATTATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAAAAACAACAACTTGAGGgtatgtcccaaattgga-atttcactaaa-atctagattagtttgcttaagtgttttttaatcaaccaagcgggtctagcataaaaagttttcgtttttaat-------
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TGCCGGCAAAGCTCCCAGAGGTGTCAAAACCAATTGGATCATGCACGAGTATCGCCTCGCCAATGTTGATCGATCCGCCGGCAAGAAAAA------CAACTTAAGGgtacgattgtaattctatactacattaaagatatttatttattatttaaaaaaaaaagaaaaagagtgatggttctttttattgatatatattattattgactttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120533637|gb|EH261770.1|EH261770EST: TCGCCAATGTTGACCGATCTGCCTCCAAGNNNNNNNNCAACAACTTGAGG CTTGATGATTGGGTGTTGTGTCGAATCT---ACAAGAAAGGGAAGATTGAG
genomic: TCGCCAATGTTGACCGATCTGCCTCCAAGAAAAAAAACAACAACTTGAGGgtatgtccca ... tggtgcacagCTTGATGATTGGGTGTTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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AAAAGCCCCCAAAGGTGTGAAAACCAATTGGATTATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAAAAACAACAACTTGAGGgtatgtcccaaattggaatttcactaaaatctagattagtttgcttaagtgttttttaatcaaccaagcgggtctagcataaaaagttttcgtttttaat
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