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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatcactattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag

Basic information

species Glycine max
transcript GLYMA04G37920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g70190.1 (Oryza sativa), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaa-----gaaat--ttag---tgtaccgtttta-attttgctattttcat-cactattagttctat-taagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
 ||| | ||||| ||  | ||||| ||||||||||||||||| |||||||| |||||||||||    || ||||| || || ||||||||||||||||| ||||     | |||  |||    || ||  || || ||      ||    |   || || ||    || ||   | ||||   ||     |  | |  | |   | | |||     | |||  |||  | |||| ||   ||    |   ||   | |||    | |||    | | |||
TCAGTTCATTTCCTCGCATTGGCCCTATTGGAACAGGACAGATGGGGCAGACCATTTCTTTGTTGTGCCACATGATTTCGGAGCATGCTTCCATTATCAGgtaaatcaaggaatcattaaccttgaactattgtatatcaaatcatggaaacatacgatgagcctcatctacatactcaatacaacgaaatcat-tcagctccaatgtacc--aattgttacccttttacatgttcaaccatgggatcttatttgcatttg--gtttttccatgattcag

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g70200.1 (Oryza sativa), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgc-tattttcatcactattagttctattaagaattcaaacaaattgtgtggt-gtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
  |||| ||| |  |||| |||||||| ||||| ||  |||| ||||| |||||||||||||| || || ||||||||||| || |||||||| ||||| |||        |||  |     ||  | |||   |  || ||  ||  |   |   | |  || |     |  ||| |   | |||| ||    |  || |                                                                    
TGAGCTGATTGCAACAAATTGGCCTTACTGGAATAGATCAGAGGGGGCTGATCATTTCTTTGTTACACCACATGACTTTGGCGCTTGCTTCCACTATCAGgtacatgcacaagtacaaaaccttgctgttggacacatttattcctcct---ttagtgagcaaattctggactttgagcattagtttagtactgaacacttaa------------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G000581_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatc-actattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
  |||| ||| |  | ||||||||||| ||||||||  |||| || ||||||||||||||||| || || ||||||||||| || |||||||||||||| |||  ||    |  |   | |        ||     | |||  |    |  ||| ||||| ||     | |   |      |  | | |||| |     ||| ||                                                               
TGAGCTGATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAGATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtacaaacaccaccggtacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagta-----ttgaat---------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G152029_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatc-actattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
  |||| ||| |  | ||||||||||| ||||||||  |||| || ||||||||||||||||| || || ||||||||||| || |||||||||||||| |||  ||    |  |   | |       |||     | |||  |    |  ||| ||||| ||     | |   |      |  | | |||| |      || ||                                                               
TGAGCTGATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAGATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagttgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagta-----ctgaat---------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G141094_T02 (Zea mays), 5'ss of exon 1
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatcactat-tagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
              | ||||||||||| ||||||||  |||| || ||| ||||||||||||| || || ||||||||||| || |||||||||||||| |||  ||    |  |   | |        ||     | |||   | | |  ||| ||||| ||     | |   |      |  | | |||| |      || ||                                                               
-------------ACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCAAATCATTTCTTTGTCACGCCACATGACTTTGGTGCTTGCTTCCATTATCAGgtataaacaccaccgatacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagta-----ctgaat---------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G059825_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatcactattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
 ||||| ||| || | ||||||||||| ||||| ||  |||| || ||||||||||||||||| || || ||||||||||| || ||||| |||||||| |||  |   | |||  |    || |||   | | ||        ||||  | ||  |||  |    |  | || ||   |  ||  |  |  |     | | | | |                                                            
CCAGCTGATTGCTACGAACTGGCCTTACTGGAATAGATCAGAGGGCGCAGATCATTTCTTTGTCACACCCCATGACTTTGGTGCTTGCTTTCATTATCAGgtacaatgct-agtaga----ttaaatagcggt-ttcatgcatttatttatccttctaatgaaa-gattagatggttcagcattcagcaatgatagtttagtagtgt------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G301552_T01 (Zea mays), 5'ss of exon 9
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatc-actattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
  |||| ||| |  | ||||||||||| ||||||||  |||| || || |||||||||||||| || || ||||||| ||| || |||||||||||||| |||  ||    |  |   | |        ||     | |||  |    |  ||| ||||| ||     | |   |      |  | | |||| |      || ||                                                               
TGAGCTAATTGCCACGAACTGGCCTTACTGGAACAGATCAGAGGGTGCGGATCATTTCTTTGTCACGCCACATGACTCTGGTGCTTGCTTCCATTATCAGgtataaacaccaccggtacatgaagtagctgtagcgtgcatttatctatgcttccattaataaagtttagatgctaatcaataatagatgagta-----ctgaat---------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G056702_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagt-gtaccgttttaattttgctattttcatcactattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag----------
 ||| | |||||       ||||| || |||||||||||||| || ||||| || ||||||||    || ||||||||||| ||||||||||| || || || ||   |  ||   || |     |  |   | ||       |||   ||| |  |   ||||   |||  |  |  |||    |  |   | |||  ||| | | | |   ||| | | | ||||  |  |   |    || |  | | ||||   || |  |             
TCAGTTCATTTCCAACCGGTGGCCATACTGGAACAGGACAGAGGGAGCAGACCACTTCTTTGTCGTGCCACATGACTTTGGCGCATGCTTCCACTACCAGgtgagttgtagagccataacaaacca--tgaaccatcagatgtactgccagtgcagtgtggaat--gaaccta--gcctggaaactcatataacggagtttgaaatctttctatcattctattcatgtttgctcataggaccattcgtctaatgtcgctcagcacacccattgttcag

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G059845_T01 (Zea mays), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatcactattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
 |||    | ||      |||||| || ||||||||||| || ||||| || |||||||| || || || ||||||||||| || |||||| | |  || || ||  |   |   ||||| |  |  |  |  ||    | ||     ||||| |         | | | | ||      |     | |||   |  ||  || || ||      |||||      | | |                                    
CCAGTACGTCTCCAAGCGCTGGCCCTACTGGAACAGGACGGAGGGGGCCGACCATTTCTTCGTCACTCCACATGACTTTGGAGCGTGCTTCTACTTCCAGgtgagtgacggacgctaccgatgcagctagga-atgcagagcatgg--agttccagc-------ctagccatttcccccatacacagcgagcttgcactcagagttgatat----atatgcttgctgctgtccag--------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G61840.1 (Arabidopsis thaliana), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatcactattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
 ||||||||| |||| || ||||| || |||||  | |||||||| ||||| || ||||||||    |||||||||||||| || || ||||||||||||||||  |||  | | |    |     | ||  | |||  |||   | |||   |     |  |    |  | || |    | ||      || ||                                                                        
TCAGCTTATTGCTTCCAATTGGCCATACTGGAATCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCATTATCAAgtaaacaatagaatcttttctcagtctctttttctttctatcctaagtaggctttgcttgcttgatcaatacttctacactattctaaatgatggtgtgc-------------------------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv01s0150g00180.t01 (Vitis vinifera), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatttagtgtaccgttttaattttgctattttcatcactattagttctattaagaattcaaacaaattgtgtggtgtttggtgagaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtttttccgttccag
|||||| |||||||||||||||||||| |||||  ||||||||||||| ||||| ||||||||    |||||||||||||| || ||||| ||||| ||||||||           ||| |  || | || | ||  |  | |  |||   | | | || |  |   ||  ||    || | || |||  |    |        ||| || | |                                                     
ACAGCTCATTTCTTCAAACTGGCCTTACTGGAATCGGACAGAAGGGGCTGATCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGCTTTCATTACCAAgtaag-----------accctcgtattcttac-atactagttaggatt---tttttcaaaatctagtacttatatcttgatatt-ggtatgctacatacaatgctttcttgtcctg---------------------------------------------------

upper sequence: GLYMA04G37920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g00120.t01 (Vitis vinifera), 5'ss of exon 2
ACAGCTTATTTCTTCAAACTGGCCTTATTGGAACAGGACAGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaattt-agtgtaccgtttta------attttgctattttcatcactat---tagttctattaagaat----tcaaacaaattgtgtggtgtttggtg----agaaggaccttggattttattcttcaatatgtacatggatattgtaacatgcacttttatcatgtt--tttccgttccag---
||||||||| |||||||||||||||||||||||  ||||||||||||| ||||| || |||||    || |||||||||||||| ||||||||||| ||||||||||| || | | |    | | |      | |   | |  |||||   | |   ||||    || |   |    |  ||| || ||       ||| ||     |||  | |||  |  |    ||||   |   || |   || |  | || | ||||       ||||  | ||| ||  |    
ACAGCTTATCTCTTCAAACTGGCCTTATTGGAATCGGACAGAAGGGGCTGATCACTTTTTTGTAGTGCCCCATGACTTTGGGGCGTGCTTCCATTACCAAgtaagaaacttcaatttcttttgtcacccagtactcccccacattcattcgtttggatagtctgcttgaatgtgctcttgaaccaactggcccagatttagtttttcagagaggcctctggctagtgtcttttcttcctaaactcat-tattcactttcactgggcctctgttcatgtccattataacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411015|gb|EV280826.1|EV280826
EST:     ATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAA                         GAAGAGAAGGCAATTGAAAGAGGAATTCTTCCATTGCTTCAGCGTGCTACC
genomic: ATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGCTTCCATTATCAAgtaagaaatt ... tccgttccagGAAGAGAAGGCAATTGAAAGAGGAATTCTTCCATTGCTTCAGCGTGCTACC