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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactctcaattgaatctcaggattctgaaattgttcgaaaatcaaaggaaaaaaaatagggttgatatttgtttctgaaactgtgggggaatgaaataagaaagttagggtttagtttattatggagaagagttgaagtttgatggttttaactgaactgttgtgtgtgtgtttgtttgtggtgctag

Basic information

species Glycine max
transcript GLYMA04G37030.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410487|gb|EV280302.1|EV280302
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|254321270|gb|GR824587.1|GR824587
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298181405|gb|HO022844.1|HO022844
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|6719165|gb|AW306812.1|AW306812
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|192325767|gb|FK017989.1|FK017989
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATT
EST: gi|298196386|gb|HO041129.1|HO041129
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298196464|gb|HO041207.1|HO041207
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCATATGGTGAAGCCCGTGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|17400147|gb|BM176929.1|BM176929
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|9439733|gb|BE440247.1|BE440247
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|18041174|gb|BM309468.1|BM309468
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|8827593|gb|BE211323.1|BE211323
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298189385|gb|HO037788.1|HO037788
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACACTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|120533672|gb|EH261805.1|EH261805
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|213618293|gb|DB973063.1|DB973063
EST:     CCGGAGAACTCTCCGCCGCTCCATTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|192333182|gb|FK026511.1|FK026511
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|193645225|gb|FK587883.1|FK587883
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298198281|gb|HO039820.1|HO039820
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|15814359|gb|BI786634.1|BI786634
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|18716094|gb|BM522869.1|BM522869
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|192299603|gb|FG987735.1|FG987735
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|17519181|gb|BM188223.1|BM188223
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|6227844|gb|AW156443.1|AW156443
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGTTTCTTGANAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|193527066|gb|FK485460.1|FK485460
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGG
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGG
EST: gi|298198546|gb|HO040085.1|HO040085
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|193340871|gb|FK307148.1|FK307148
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298175351|gb|HO016010.1|HO016010
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|151411725|gb|EV281536.1|EV281536
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|192322800|gb|FK014491.1|FK014491
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|6502002|gb|AW203375.1|AW203375
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298167708|gb|HO012971.1|HO012971
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|298172907|gb|HO019891.1|HO019891
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGGC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|58014664|gb|CX701406.1|CX701406
EST:     CGGAG-ACTTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CGGAGAAC-TCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|14126592|gb|BG791030.1|BG791030
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactctcaattgaatctcaggattctgaaattgttcgaaaatcaaaggaaaaaaaatagggttgatatttgtttctgaaactgtgggggaatgaaataagaaagttagggtttagtttattatggagaagagttgaagtttgatggttttaactgaactgttgtgtgtgtgtttgtttgtggtgctag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA