1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactctcaattgaatctcaggattctgaaattgttcgaaaatcaaaggaaaaaaaatagggttgatatttgtttctgaaactgtgggggaatgaaataagaaagttagggtttagtttattatggagaagagttgaagtttgatggttttaactgaactgttgtgtgtgtgtttgtttgtggtgctag
species | Glycine max |
transcript | GLYMA04G37030.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|208121767|gb|GD918524.1|GD918524
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|6227844|gb|AW156443.1|AW156443
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGTTTCTTGANAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|192322800|gb|FK014491.1|FK014491
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|193645225|gb|FK587883.1|FK587883
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|8827593|gb|BE211323.1|BE211323
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|208186300|gb|GD984605.1|GD984605
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGEST: gi|151410487|gb|EV280302.1|EV280302
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTG
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|193340871|gb|FK307148.1|FK307148
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|15814359|gb|BI786634.1|BI786634
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|208061415|gb|GD860109.1|GD860109
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATEST: gi|298189385|gb|HO037788.1|HO037788
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTAT
EST: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACACTATTCAGATGGTGAAGCCCGCGAAGGGTEST: gi|58014664|gb|CX701406.1|CX701406
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: CGGAG-ACTTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CGGAGAAC-TCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactctcaattgaatctcaggattctgaaattgttcgaaaatcaaaggaaaaaaaatagggttgatatttgtttctgaaactgtgggggaatgaaataagaaagttagggtttagtttattatggagaagagttgaagtttgatggttttaactgaactgttgtgtgtgtgtttgtttgtggtgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA