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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactctcaattgaatctcaggattctgaaattgttcgaaaatcaaaggaaaaaaaatagggttgatatttgtttctgaaactgtgggggaatgaaataagaaagttagggtttagtttattatggagaagagttgaagtttgatggttttaactgaactgttgtgtgtgtgtttgtttgtggtgctag

Basic information

species Glycine max
transcript GLYMA04G37030.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321270|gb|GR824587.1|GR824587
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|208121767|gb|GD918524.1|GD918524
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|6227844|gb|AW156443.1|AW156443
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGTTTCTTGANAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|192322800|gb|FK014491.1|FK014491
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|193645225|gb|FK587883.1|FK587883
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|8827593|gb|BE211323.1|BE211323
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|208186300|gb|GD984605.1|GD984605
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTG
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTG
EST: gi|151410487|gb|EV280302.1|EV280302
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|193340871|gb|FK307148.1|FK307148
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|15814359|gb|BI786634.1|BI786634
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|208061415|gb|GD860109.1|GD860109
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTAT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTAT
EST: gi|298189385|gb|HO037788.1|HO037788
EST:     CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACACTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
EST: gi|58014664|gb|CX701406.1|CX701406
EST:     CGGAG-ACTTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGAC                         TTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT
genomic: CGGAGAAC-TCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactc ... gtggtgctagTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACgtgaggactctcaattgaatctcaggattctgaaattgttcgaaaatcaaaggaaaaaaaatagggttgatatttgtttctgaaactgtgggggaatgaaataagaaagttagggtttagtttattatggagaagagttgaagtttgatggttttaactgaactgttgtgtgtgtgtttgtttgtggtgctag

- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA