Sequence
atgc intronic sequence ATGC exonic sequenceCAAAGGAAGGGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAGTATAGACTTGATGGAAAATTCTCTGTTCACAACCTCCCCAAAACTGCGAAGgtaataataataacaataacaactaataacaattttttattttgtcttgaccatgttgcttcctttgtaccacttgttatgagaattttgtttgttgagtttgattcagtgctattcgttattgttgtgctgcag
Basic information
species | Glycine max |
transcript | GLYMA04G33270.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G33270.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G07680.1 (Arabidopsis thaliana), 5'ss of exon 2
CAAAGGAAGGGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAGTATAGACTTGATGGAAAATTCTCTGTTCACAACCTCCCCAAAACTGCGAAGgtaataataataacaataacaactaataacaattttttattttgtcttgaccatgttgcttcctttgtaccacttgttatgagaattttgtttgttgagttt---gattcagtgctattcgttattgttgtgctgcag
|| |||||| ||||| || || ||||||| ||||||| |||||||||||||| || ||||||||| |||||| ||||||| | || ||||| || ||||| | ||||| |||||| | || | ||| || | ||| || || | || || || | | || | |||||||| | | ||| | || || | ||| | |
CAGAGGAAGAGCTCCTAAAGGCCAGAAAACAAATTGGGTGATGCATGAGTATAGGCTAGATGGAAAACTCTCTGCTCACAACTTGCCTAAAACCGCTAAGgtca-aataaaaacaatccaagctttgctctgtttcttgctctgtttt-acaactctgtttttgttttgttttgtttttttttccatttgtttgataatttttggggtttggttccatttggcag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7591424|gb|AW707157.1|AW707157EST: ATAGACTTGATGGAAAATTCTCTGTTCACAACCTCCCCAAAACTGCGAAG AATGAGTGGGTGATTTGCAGGGTTTTTCAGAAGAGTTCAAGTGTGAAGAGG
genomic: ATAGACTTGATGGAAAATTCTCTGTTCACAACCTCCCCAAAACTGCGAAGgtaataataa ... tgtgctgcagAATGAGTGGGTGATTTGCAGGGTTTTTCAGAAGAGTTCAGGTGTGAAGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAGGAAGGGCTCCCAAGGGAGAGAAAACTGATTGGGTCATGCATGAGTATAGACTTGATGGAAAATTCTCTGTTCACAACCTCCCCAAAACTGCGAAGgtaataataataacaataacaactaataacaattttttattttgtcttgaccatgttgcttcctttgtaccacttgttatgagaattttgtttgttgagtttgattcagtgctattcgttattgttgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA