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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGACGACGTCGTGGAGAGCGGATCGGAGAGGTCCGAGGAAAATCAGTACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaatgataattcacacatggttttgatgtttttattgttttcttgctgatttctcatgttttcttaattcttatgctcttgcatgcatgtgtta...

Basic information

species Glycine max
transcript GLYMA04G32540.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079155|gb|GD877023.1|GD877023
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGAACTTAGCATGCGGCC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGA-CTT-GCATGCGGCC
EST: gi|208116058|gb|GD919493.1|GD919493
EST:     TGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCAGCCCC
genomic: TGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: gi|207825564|gb|GD800607.1|GD800607
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: gi|208139406|gb|GD933902.1|GD933902
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGAC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGAC
EST: gi|207702034|gb|GD683908.1|GD683908
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: gi|193642568|gb|FK594078.1|FK594078
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: gi|193464137|gb|FK427921.1|FK427921
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: gi|208265109|gb|GE061741.1|GE061741
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGATGAAAAAGATGAGACTCGTGACTTGCATGCGGCCCC
EST: gi|193565706|gb|FK524531.1|FK524531
EST:     TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAG                         TGGGTCACCCAGGGAT
genomic: TACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaat ... caaaatgtagTGGGTCACCCAGGGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGGACGACGTCGTGGAGAGCGGATCGGAGAGGTCCGAGGAAAATCAGTACGCTCACCATGATGACGGGGAAGAAGTGGATGAAGCCAGAAGCCCCAGgtatctgaatgataattcacacatggttttgatgtttttattgttttcttgctgatttctcatgttttcttaattcttatgctcttgcatgcatgtgtta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC