Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCAGGGGTGAACTTGTCATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGgtgtgttgttctagtgtcaacattatttgatcttttacattgtatcaatttactgcaaacttctcttgctgttgattttgatttctgctataaaaatgga...

Basic information

species Glycine max
transcript GLYMA04G24950.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G24950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0065g00860.t01 (Vitis vinifera), 5'ss of exon 2
TGGCAGGGGTGAACTTGTCATGGACCCAAAGAAGATTGCAAGGAGATATATAAGATCTGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGgtg-tgttgttctagtgtcaacatt--atttgatcttttacattgtatcaatttactgcaaacttctcttgctgttgattttgatttctgctataaaaatgga
||| |||||||||||||| ||||| || ||||| || ||   ||| ||||| || ||||||||||||||||||||  |||| ||| | ||||| ||||||||  |  | ||  ||| ||||  ||  |||||    | | |||| | |||| |   | || | | ||||   | |   | |   ||     |  ||| |  | 
TGGGAGGGGTGAACTTGTGATGGATCCCAAGAAAATCGCCCAGAGGTATATTAGGTCTGATTTCTTCATTGATTTGGTTGCAACATTGCCTCTCCCTCAGgtaatcattttgaagtatcaaatttccatttggaagtat-catttt-tcaactgtttacacattgctctgtgtatgtgtgtgtgttataattgaaaatacag-