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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattatttctgttgcataatttgaatattcacttgtgctgatctggaaataaaaaacaatggtgcag

Basic information

species Glycine max
transcript GLYMA04G24920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G24920.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os09g20820.1 (Oryza sativa), 5'ss of exon 3
TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattatttctgttgcataatttgaatattcacttgtgctgatctggaaataaaaaacaatggtgcag----------------
||||||||||||||| || |||||||| | ||||||||| ||||| || ||  |||| || ||  ||||||||||||||||||| || ||  |||| |||||   || |||  |  |  ||| | |  ||   ||| ||| |  ||      |  | |     |||   | |||  ||                   
TGTTGGAGATGAAGGTGGCTTTGCTCCTAATGTTCAAGACAACAGAGAAGGCCTTGTCTTGCTTATGGATGCCATTGAGAAGGCAGGCTACTCTGGAAAGgtc--tgcagtcatcttgttttatttcccaccttttcaatgtggaccaccttttttttttttgtaacttataatactgtgaacccatcctactgcag

upper sequence: GLYMA04G24920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G034848_T01 (Zea mays), 5'ss of exon 3
TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattatttctgttgcata---atttgaatattcacttgtgctgatctggaaataaaaaacaa----tggtgcag
||| |||||||||||||| |||||||| | ||||||||| ||||| |||||  |||| || ||  ||||||||||||||||||| || || ||||| | |||| |  |   | | | || ||   |||   |    ||||| | ||| ||||   | || | ||| |  |||||||    |  |||||
TGTCGGAGATGAAGGAGGTTTTGCTCCTAATGTTCAAGACAACAGAGAGGGTCTTGTCTTGCTTATGGATGCCATTGAGAAGGCAGGCTACACTGGAATGgtgtgatatcatctaactagtttcattggccacttgtttgattgttctcttgattttattttgaattttaaaacaaatcctaatgcag

upper sequence: GLYMA04G24920.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G009030_T01 (Zea mays), 5'ss of exon 3
TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattatttctgttgcata---atttgaatattcacttgtgc--tgatctggaaataaaaaacaa----tggtgcag
||| |||||||||||||| |||||||| | ||||||||| ||||| |||||  || | || ||  ||||||||||||||||||| || || ||||| || ||| |  |   | | | || ||   |||   |    ||||| |  || |||||    |  | |  |  | ||| ||||    |  |||||
TGTCGGAGATGAAGGAGGTTTTGCTCCTAATGTTCAAGACAACAGAGAGGGTCTTATCTTGCTTATGGATGCCATTGAGAAGGCAGGCTACACTGGAAAAgtgtgatatcatctaactagtttcattggccacttgtttgattgctctcttgttttttactttaaatgttaaacacaaatcctaatgcag

upper sequence: GLYMA04G24920.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G74030.1 (Arabidopsis thaliana), 5'ss of exon 3
TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattatttctgttgc--ataatttgaatattcacttgt-gctgatctggaaataaaaaacaatggtgcag-----------------------------------------------
||| |||||||||||||| ||||| || | ||||||||||||||| |||||  | ||| | ||| | ||||| ||||| ||||| ||||| ||||| |||||   | ||||| |  || ||| |  |||  ||| ||   | | |  | |||      | |     |||| |||    | ||||                                               
TGTCGGAGATGAAGGAGGGTTTGCGCCGAATGTTCAAGATAACAGAGAGGGACTAGTTCTGCTCATAGATGCAATTGAAAAGGCCGGTTACACTGGAAAGgtaa-tcaagttctctttctttttaatgctaatacttgctaaagttgcatgtcatctgtgtttccctaaacaacttctg-gcagcttcggtgtcaatcttacaccactcacataatatataatttttgcag

upper sequence: GLYMA04G24920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv17s0000g04540.t01 (Vitis vinifera), 5'ss of exon 3
TGTTGGAGATGAAGGAGGATTTGCTCCCAGTGTTCAAGATAACAGGGAGGGGTTTGTTTTACTCGTGGATGCCATTGAGAAGGCTGGTTATACTGGCAAGgtgggtgaagttttgattat-ttctgttgcataatttgaatattcacttgtgctgatctggaaataaaaaacaatggtgcag
|||||| ||||| || ||||||||||||| |||||| ||||| ||||||||||| ||| | ||  ||||||| ||||| ||||||||||| || |||||||| || |   | ||| || | || | ||    | ||||| | | |  |||      |   | | |  |||  |||| |||||
TGTTGGGGATGAGGGGGGATTTGCTCCCAATGTTCAGGATAATAGGGAGGGGTTGGTTCTGCTTATGGATGCAATTGAAAAGGCTGGTTACACAGGCAAGgtaggcgggttgttgcttttcttttcttttgcagtttgattttcc--ttgcagcctttaaggactccaaataaatgatgcag