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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCTACAAATTCCTCCAGGTGACAAGATTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgcacggaatatatacaagtgctttttctaaatagttaatgtatttgtacctgtttgtacctgattttgttgagtgtacattagaaacaatagc...

Basic information

species Glycine max
transcript GLYMA04G17050.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G17050.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G26110.2 (Arabidopsis thaliana), 5'ss of exon 2
GCGATCTTTTGGAACAGAAGGAAGGAAAAAGGATGGCCTACAAATTCCTCCAGGTGACAAGATTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgcacggaatatatacaagtgctttt-tctaaatagt-taatgtatttgtac-ctgtttgtacctgattttgttgagtgtacattagaaacaatagc
 ||||| |||||||| |||||||||||||| ||||| | |||| |||||||| |||||||  |||| ||||| ||| | |||||||| ||||| ||||||||||   |||  | || ||| | | | ||| | | ||| |||  |   |  ||||||| ||| |||| | || | ||| |                       
TCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCACAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAGgtattcagca--ggat-tatgctaatacttctatgtaagtagcctgccgattttgtactctgattgttcttgttgttggtag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815599|gb|BI787874.1|BI787874
EST:     CAGGTGACAAGATTTATGAGTATATACTTTTCCGTGGGACTGACATCAAG                         GATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC
genomic: CAGGTGACAAGATTTATGAGTATATACTTTTCCGTGGGACTGACATCAAGgtatcatgca ... ttttttgcagGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAAC