Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag

Basic information

species Glycine max
transcript GLYMA04G14640.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| ||||| |||||||||||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | ||| |  |  |     | | | |        |   | |||| |||| |     ||||  |   ||      |  | |   ||| |||  | || |||||  |    ||||                           
CACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtgagctccctggcctccctatcgcgcatgactatgttagcaattgccac--tagtactgcatgtgcttgaattta---tgaatta--aatacggttatctcc--ttct---------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| ||||| || ||||| ||||| ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | |||||  | |         ||| ||| |||  |  | |   ||||   | ||| | |                || ||| ||  ||||  |  |  || ||  | |   | ||   ||| |    ||          
CACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtaaagtga---------ttgatctcttgcgatctatc--taatgattatgtgaat--------------gaatgagcatg--ttagcttcctacttgctcgtgagattgtgctgtgtaacatatgc---------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| ||||| ||||||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | ||| |  |  | | | | |||   || ||  | | |   | ||  ||  ||| | |  ||      | |   | | |     || |||| ||    |  | |  || |                             
CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagct--cttctgtgcttaccctctttcagccttccaatatgttgcgtgcttgaattcaagacttagttgtttac----agatagt-ttgccatgccctgcaaat-----------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G145280_T01 (Zea mays), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgta-atttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | ||||   | | |        |      ||| |  || | || ||  || ||  |   |   ||      |     |     |  | || ||    | | |                                      
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtacgctcaccgccgcccgtccgctctttcagcctacctactatattttgcatgcttgaattccaactagtgtttggcaattggctaataaacagctcat-------------------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G081102_T03 (Zea mays), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac--atattttcttgttcttttgaaacttctta-gtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| ||||| || |||||||| || ||||||   |||||||||||||||||||| ||||| |||||||| ||||| || || |||   ||  | ||  | ||| |  | |     ||||| | |      |  ||| | |   ||  ||  ||  ||     |   |  |||| || |||  |    |    |||    ||                                       
CACAACAACGTCATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtgagctcatcgccattttttagcctacctacaacatttcgcgtgcttgttgaattcaaactagctaataaacaggtcacttgtcctgcccattgcaatt---------------------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| ||||| |||||||| |    |||||| || |||||||||||||| ||||| ||||| ||||| || ||||| ||  |||||||||| |||||  | |||    ||  | | | |||   | || |      | | | | ||||   | ||| | ||        || ||   |  ||   || || | |||  |  | | |                                
CACAACAACGTTATCCCGAGCTCACACTTTCGCAAGCACTGGCAGAATTATGTCAAGACTTGGTTTAACCAGCCTGCCAGGAAGACAAGGAGACGTGTTGgt----tagtaaagtctctacattttcta----ctttaaatgattttgctcttaatttt--------aatagtgtatgtttcttttgtgtgatgtgttttctcag-------------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|| |||||||||||||||||||| ||||||   |||||||||||||| ||||| ||||| |||||||| ||||| ||  |||| || |||||| |  | ||| | |     || | ||     ||| ||| |    ||   |  ||  || |||   ||       ||     ||   ||| ||   ||||||| |||  ||  |  |                            
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagtagtaatgtca-acacttctgata----ttgtcatgtttcgttttaagtttacactacaa-----tctctttgggtct-tattatg-ttatgttgtacacag--------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttt-tgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|||||||||||| | || ||||| ||||||   |||||||||||||||||||| ||||| |||||||| || || || || || ||  ||||| |  | ||||  |   | | || |||| |   ||   ||||| |   |   || |   | ||| | | |    |       |    | ||||  | || |   ||     |                                 
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgta--tgggctttttctcttctaggtt---aacttgtccatttcttgtcattgagtttctataccattgtggatttgaatggagtaggcataaaatttgtgggtt--------------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttc-ttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
||||||||||||||||||||||| ||||||   ||| ||||||| |||||||||| ||||||||| || ||||| || || |||| ||||||| |   ||||    || |||     |  |||  |  ||||  |  |||  || |     ||  ||  |||| |     | |||  |  |||           ||| ||  |     |||||                        
CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgt----tagcatcccaccgctgtattggtgaatttggttacaaact-----gtccgttatttgagactctatgatatgtgtga-------cagcggtaaccctaggacctttggtg---------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
|||||||| || || |||||||| ||||||   ||| |||||||||||||||||| ||| |||||||| ||||| ||||| |||| ||||||| |   |||| |  |   |   ||| || | ||         | ||  | ||   |  |||| |   || | ||||  | |||  |  | || |  | |  |  |||    |                                
CATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggtt-taggctttgttatcctcc----gtcttttgattatggattagttaattaatt-tagtaatgaaatcc-cacgcgtgatcaatgcgtctacaaccatag-----------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S459_9V6.3 (Physcomitrella patens), 5'ss of exon 1
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
||||||||||| |||||||| || ||||||   ||| |||||||||||||||||| |||||||||||| ||||| ||||| ||||  |||||| |   ||||| | |      |||   ||   |||||     | ||  | |     ||    |  |||| ||| | | || |   ||||     || ||     ||  |  ||                               
CATAACAATGTCATCCCCAACGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCACGCAAGAAGAGAAGAAGAACGGgtattgtcgtgcttttctgtgaagttttg-----tttttatgacggtggtacgggcgttttttggaacacagtt---cttgtccatgtgtttcttataactcgaacca----------------------------

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S47_277V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag--
||||||||||| ||||| || ||||| |||   ||| ||||||| |||||||||| ||| |||||||| ||||| || || |||| ||||||| |    ||||             |     || |||||| |||  |                          ||||    |  ||  || || ||| | ||  ||  ||||   | |||||| |    |  |||  |  || ||  
CATAACAATGTCATCCCTAACGGACATTTCAAGAAGGACTGGCAAAACTATGTGAGGACGTGGTTCAACCAGCCCGCTCGCAAGAAAAGAAGAAGAACAGgta--------cggccttacactcctttgaagcttgct--------------------------gtaatggaactag--tgcgtgagtttcat--ttgtttttttatttttgacctagggtgtctgcgtgtttaaggc

upper sequence: GLYMA04G14640.2 (Glycine max), 5'ss of exon 2
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag
||||| ||||||||||||||||| ||||||   ||| |||||||||||||||||| |||||||||||| ||||| || || |||| ||||||| |   |||||| |  | |  ||||   | ||||    || |  ||  ||  ||         ||  || |     ||   | |  ||   || || |   |   |  |  ||  || |||  |                    
CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaact--atagttttttcggatcttcctgaattggttgttagctt---------tcccttattacggaagtgtaatttt---tttgtctg--gaacatctcaaaccctatgaatt--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814215|gb|BI786490.1|BI786490
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|12774389|gb|BG239316.1|BG239316
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|20814298|gb|BQ298776.1|BQ298776
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|18734388|gb|BM528153.1|BM528153
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6724689|gb|AW309022.1|AW309022
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|23732733|gb|BU764538.1|BU764538
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|26059098|gb|CA802012.1|CA802012
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|120533479|gb|EH261612.1|EH261612
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15203036|gb|BI425804.1|BI425804
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6502182|gb|AW203555.1|AW203555
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTACCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19453465|gb|BM954875.1|BM954875
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|21678445|gb|BQ630796.1|BQ630796
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCTTTATCTACAGCTGGACCT
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCC-AGACCTACAGCTGGACCT
EST: gi|38193701|gb|CF922907.1|CF922907
EST:     TTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|38192415|gb|CF921621.1|CF921621
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|4293744|gb|AI437949.1|AI437949
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|209709536|gb|BW681226.1|BW681226
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|9900318|gb|BE609286.1|BE609286
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15813220|gb|BI785495.1|BI785495
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15285759|gb|BI469650.1|BI469650
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|22524921|gb|BU083732.1|BU083732
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6747093|gb|AW317549.1|AW317549
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|254337993|gb|GR845456.1|GR845456
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|8670219|gb|BE191326.1|BE191326
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|8827981|gb|BE211711.1|BE211711
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|7042619|gb|AW472513.1|AW472513
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTTGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19268693|gb|BM884949.1|BM884949
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|21677230|gb|BQ629581.1|BQ629581
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19268958|gb|BM885214.1|BM885214
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|58019572|gb|CX706314.1|CX706314
EST:     TGTGAAGACNTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACNTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|16995671|gb|BM085043.1|BM085043
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|9901290|gb|BE610258.1|BE610258
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|11274510|gb|BF324863.1|BF324863
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|24136545|gb|BU927055.1|BU927055
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|14008777|gb|BG725381.1|BG725381
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|19053098|gb|BM731765.1|BM731765
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|17023206|gb|BM094240.1|BM094240
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15203336|gb|BI426104.1|BI426104
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|16106184|gb|BI893924.1|BI893924
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAACACGGTTGG                         ATCGTCAGAAAAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|4395852|gb|AI494849.1|AI494849
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGATGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|213592187|gb|DB965978.1|DB965978
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15204350|gb|BI427118.1|BI427118
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|120533320|gb|EH261453.1|EH261453
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|4314143|gb|AI461262.1|AI461262
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|254337988|gb|GR845451.1|GR845451
EST:     GTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: GTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|21256994|gb|BQ453882.1|BQ453882
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|6916448|gb|AW397978.1|AW397978
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|120533365|gb|EH261498.1|EH261498
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|5677540|gb|AI938670.1|AI938670
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|8284791|gb|BE022350.1|BE022350
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|17021504|gb|BM092538.1|BM092538
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|58015231|gb|CX701973.1|CX701973
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|22524434|gb|BU083245.1|BU083245
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
EST: gi|15661801|gb|BI699172.1|BI699172
EST:     TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGG                         CTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC
genomic: TGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaac ... tattcttcagCTCGTCAGAAGAAAGCTGTGAAGATTTTCCCCAGACCTACAGCTGGACCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAACAATGTTATCCCCAATGGACACTTCCGTAAGCACTGGCAGAACTATGTGAAGACCTGGTTCAATCAGCCAGCACGGAAGACAAGAAGACGGTTGGgtaatttaacatattttcttgttcttttgaaacttcttagtaatttctgtgttagtcttttgtggtaaaaagatcagcttgagttagtattatggttacttttaattctttgacatgttattgctgtattcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG