1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAACAGGTCTACCACTTTGCTTTGCAGTATCAAGGTTCTTATAGTGATTCACTTGGATCAGCTGTTTGCCCATTTTATTGCTCATATTCAGGTTTCAAGgtaaatccattttctactactagtgctttcagtcaaaattgtgtggtttggttggcatgtagtattaagagaaaaataagaatttaatttttatgcagcg...
species | Glycine max |
transcript | GLYMA04G12290.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CACTTGGATCAGCTGTTTGCCCATTT-ATTGCTCATATTCAG-TTTCA-G -ATGAGCTATTGTGGGGAGCTGEST: gi|308098682|gb|HO760423.1|HO760423
genomic: CACTTGGATCAGCTGTTTGCCCATTTTATTGCTCATATTCAGGTTTCAAGgtaaatccat ... ttattttcagGATGAGCTATTGTGGGGAGCTG
EST: CACTTGGATCAGCTGTTTGCCCATTTTATTGCTCATATTCAGGTTTCAAG GATGAGCTATTGTGGGGAGCTGCATGGCTTTTCAGAGCAACAAATGCTGTT
genomic: CACTTGGATCAGCTGTTTGCCCATTTTATTGCTCATATTCAGGTTTCAAGgtaaatccat ... ttattttcagGATGAGCTATTGTGGGGAGCTGCATGGCTTTTCAGAGCAACAAATGCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAACAGGTCTACCACTTTGCTTTGCAGTATCAAGGTTCTTATAGTGATTCACTTGGATCAGCTGTTTGCCCATTTTATTGCTCATATTCAGGTTTCAAGgtaaatccattttctactactagtgctttcagtcaaaattgtgtggtttggttggcatgtagtattaagagaaaaataagaatttaatttttatgcagcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaataa