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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCTCGCAACGTTTGAGTTCAGCAGATCCAGAATTTTTCAGAAAACAGGTTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGgtttgcttctcgtgttccatgcttcagttgatactcaaatttgattataagtaaaaccttcaaacctatgcgggattcgtaactagccttttcggcattc...

Basic information

species Glycine max
transcript GLYMA04G08510.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207760670|gb|GD733671.1|GD733671
EST:     CGGAACGAATTGCCAATTTGGCTTTAGCAG                         GTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTA
genomic: CGGAACGAATTGCCAATTTGGCTTTAGCAGgtttgcttct ... gtaatcacagGTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTA
EST: gi|120494247|gb|EH222414.1|EH222414
EST:     GTTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAG                         GTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTA
genomic: GTTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGgtttgcttct ... gtaatcacagGTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTA
EST: gi|193484547|gb|FK451169.1|FK451169
EST:     TTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAG                         GTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTA
genomic: TTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGgtttgcttct ... gtaatcacagGTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTCTCGCAACGTTTGAGTTCAGCAGATCCAGAATTTTTCAGAAAACAGGTTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGgtttgcttctcgtgttccatgcttcagttgatactcaaatttgattataagtaaaaccttcaaacctatgcgggattcgtaactagccttttcggcattc

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA