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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCTATTTATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacactctctttcttcaatgtacctggacatagtgaaatctaaacaaattgtttgttgttagtgattttaatgtcaattgtgttgttgaaagtgatttttagtggatatgatattggattgggtgttgttttttttatttggtgtggttaaattcggtgtttatttttcttag

Basic information

species Glycine max
transcript GLYMA04G06080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06080.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G174757_T01 (Zea mays), 5'ss of exon 2
TCAGATTGGTGTTATCAAGGAGGATGGCCTCTGGATGCCTATTTATCCTGAAACCGAGAAAACCCTAGGTTACTGCTTCATTGAGTACAATACCCCTCAGgtatacactctctttcttcaatgtacctggacatagtgaa-atctaaacaaattgtttgttgttagtgattttaatgtcaattgtgttgttgaaagtgatttttagtggatatgatattggattgggtgttgttttttttatttggtgtggttaaattcggtgtttatttttcttag
 || ||||| |  || || ||  |||| || ||||||||| |  | || || ||  |||| ||    |||||||| ||||||||||| | ||||||||||||||      | ||  ||   | | | |   | ||||    | ||  ||||        |    | ||  || | | |   ||    |||| ||  | ||   | |                                                                       
CCAAATTGGAGCGATAAAAGAAAATGGTCTATGGATGCCTGTAAACCCAGAGACAAAGAAGACATACGGTTACTGTTTCATTGAGTATAGTACCCCTCAGgtattttacttgttggttgcgttttctt---cttagttcttacctgcacaatgaagcaatgaacaatggcttaattat--gttac-ctgttcaat-tcatccctcgc----------------------------------------------------------------------