Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGTAATAGGGAGACTTAACAGCTTGGTCTCTATgtatgtacttaactatttcattcatatttttttcactttggtcttttaatttcattggcatttctcatacttgtgccggctaggtaaaccaaggttgttt...

Basic information

species Glycine max
transcript GLYMA04G05910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05910.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 3
CAATCTTTCAGGGTTGAATCTTGAGGGCGAAATTTCACCTGTAATAGGGAGACTTAACAGCTTGGTCTCTATgtatgtactt---aactatttcattcat-atttttttcactttg-gtcttttaatttcattggcatttctcatacttgtgccggctaggtaaaccaaggttgttt
 ||||| ||||||||||||||||| || ||||| ||||||| ||||||    || ||  |  |  ||||| ||||   |  |   | || | |   | || |||||| ||| | || ||| |||||    | | |   ||   ||  ||        |||                 
TAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGTgtactgatctttaagctctctttgttatcatttttatcagtgtgagtcatttaagagtaattgttattactatgttttgtttaattag-----------------