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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactcaaatcacataacagggttcttcccccccccccccccccccccccccaccatatattgttaatctgtgtttatgtggtggtgtcag

Basic information

species Glycine max
transcript GLYMA04G05530.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05530.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g01060.t01 (Vitis vinifera), 5'ss of exon 2
ACAAGGACACCAGGATTTCATTCTCTTGGGGTGTACCAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactcaaatcacataacagggttcttcccccccccccccccccccccccccaccatatattgttaatctgtgtttatgtggtggtgtcag
||||| |||  |||||| ||||||||||| ||||| |||||| |||| ||| ||||||||||||||||| |||||||||| |||||||||| || || | |   ||        ||    | |           ||||   |   | | ||  |||  | || |||     ||   ||||
ACAAGAACAGAAGGATTCCATTCTCTTGGTGTGTATCAATCTCTGAAGAAGATACTAAAGCATGAAGGTGTTCTAGGATTTTATAAgtaagtctgaagttattcaa--------tttttactctttgttgttttccccaaaaatgttt-ttcctaacttatgctta---attgtcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315153|gb|FK009977.1|FK009977
EST:     CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAA                         GGGAAATGGAGCTAGTGTTATTCGCATTGTTCCATATGCAGCCTTGCATTT
genomic: CAATCTATGAATAAGTTACTAAAGCATGAAGGTTTTCTAGGATTATATAAgtaagactca ... gtggtgtcagGGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCAGCCTTGCATTT