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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGgtatgcaaattatgacccaacagctttcaataatagtaatgttatttctacaatttggtagtgtttgccaagtaatttcagcagttataaacaactttaa...

Basic information

species Glycine max
transcript GLYMA04G05510.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05510.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G26170.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGgtatgcaaattatgacccaacagctttcaataatagtaatgttatttctacaatttggtagtgtttgccaagtaatttcagcagttataaacaactttaa
  || | ||| ||||| || ||||||||  || |||||||||| ||||| || ||||| || ||||| ||||||||| | || ||||||||||||| | ||||        |||   ||       || |||| | ||    | ||| |    ||   ||    ||    | |   ||   |||                
GAGAAGTTGGGATAAAGAAGTTCAAAGATCTTCCAAACAGAAGCATTCCTTCCCCAATCTCAGCTTCTCCTCTTCACAAGAAAGGCCTCTTCTTCACCAGgtaca------atggtacatacatgctctataaaactatgtatgtttttgt--ttctataaccatttatgatt--ctttgacag----------------

upper sequence: GLYMA04G05510.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0008g01100.t01 (Vitis vinifera), 5'ss of exon 2
AGGAGGCTGGAATAAAAAAATTCAAAGACATTTCAAACAGAAGTATTCCCTCACCAATTTCTGCTTCCCCTCTTCACCAAAAGGGCCTCTTCTTCAGCCGgtatg---caaattatgacccaacagctttcaataatagtaatgttatttctacaatttggtagtgtttgccaagtaatttcagcagttataaacaactttaa-------------------------------------------------------------------------------
  || | ||||||||| ||||||||||||||| | |||||||| ||||||||  | || || || |||||||| ||||||||||| |||||||||| | |||||    | |  | |  | | | |  |    | | ||  |   | | ||  |     |     | |      ||| |    |  |  ||||   | ||  ||                                                                               
GAGAAGTTGGAATAAAGAAATTCAAAGACATTCCCAACAGAAGCATTCCCTCTGCCATCTCAGCATCCCCTCTCCACCAAAAGGGTCTCTTCTTCACCAGgtatttctccatatgtatctccataaatacatagactataagaatgagttagatgccatatgtatctgacttgagtgagccaacaatctataccaagctaaaaagaagaaagccagcagattttaaattcaagtgagttgatttaaagtgatcagtatatctgatgaaagttggctttgcag