1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGAGGCAAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatcttataacatttctctccttttttcataagcgattccgttacctgctgctgctgctgccttctcattttctcaattcatttttttttcag
species | Glycine max |
transcript | GLYMA04G04530.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTT GGTTGGAAGAAGAGEST: gi|151411416|gb|EV281227.1|EV281227
genomic: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatct ... tttttttcagGGTTGGAAGAAGAG
EST: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTT GGTTGGAAGAAGAGEST: gi|4296663|gb|AI442507.1|AI442507
genomic: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatct ... tttttttcagGGTTGGAAGAAGAG
EST: AAGTTGAATACCGCAACACTAAAGGATGGCAATTNCTCGTTCACTATCTT GGTTGGAAGAAGAGEST: gi|8284036|gb|BE021595.1|BE021595
genomic: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatct ... tttttttcagGGTTGGAAGAAGAG
EST: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTT GGTTGGAAGAAGAGEST: gi|192303058|gb|FG994176.1|FG994176
genomic: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatct ... tttttttcagGGTTGGAAGAAGAG
EST: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTT GGTTGGAAGAAGAG
genomic: AAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatct ... tttttttcagGGTTGGAAGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGGCAAGTTGAATACCGCAACACTAAAGGATGGCAATTCCTCGTTCACTATCTTgtaagcatcttataacatttctctccttttttcataagcgattccgttacctgctgctgctgctgccttctcattttctcaattcatttttttttcag
- - - - - - - - - - - - - - AGGATG