1 5' 3' | 2 5' 3' | 3 5' 3' |
GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttggctattgccacatgtgacatacagatgcaggcactcacatgtacatgaatttatagcttaagttcactcacatgaaatttttccctaatcgatatttatttgggtactgcag
species | Glycine max |
transcript | GLYMA04G04170.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|207830846|gb|GD803742.1|GD803742
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGNGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|193548975|gb|FK505382.1|FK505382
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACNG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|207750222|gb|GD723390.1|GD723390
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|193334383|gb|FK297585.1|FK297585
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAA-CAG GCAGAAATTATEST: gi|208241024|gb|GE039574.1|GE039574
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTAT
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|193409385|gb|FK370407.1|FK370407
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCAAAGTTAAAAGAGGAGAACGAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|193313919|gb|FK281652.1|FK281652
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAA-CAG GCAGAAATTATGGAAATTCEST: gi|208156795|gb|GD955075.1|GD955075
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTC
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|193680024|gb|FK625260.1|FK625260
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAA--GAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAA-TCAAEST: gi|10237462|gb|BE806350.1|BE806350
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAATCAAEST: gi|207835788|gb|GD806513.1|GD806513
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
EST: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAG GCAGAAATTATGGAAATTCAGAAAAANCAA
genomic: CAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttgg ... ggtactgcagGCAGAAATTATGGAAATTCAGAAAAATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTATACCATGGAATTAGAAGCAGAAGTTGCTAAGTTAAAAGAGGAGAACCAAGAACTTCAGAAAAAACAGgtaactttggctattgccacatgtgacatacagatgcaggcactcacatgtacatgaatttatagcttaagttcactcacatgaaatttttccctaatcgatatttatttgggtactgcag
- - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC