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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcgtactctcaggtttatggtagttgtaattttttgttcatcaatagcagtttcaaaattatcaactattggagcaaggacatgatacatcca...

Basic information

species Glycine max
transcript GLYMA04G03030.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G03030.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G060284_T02 (Zea mays), 5'ss of exon 2
GAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcgtactctcaggtttatggtagttgta-attttttgttcatcaatagc-agtttcaaaattatcaactattggagcaaggacatga-tacatcca
||  |||||    |  |  | | |||||  || || |  || || ||||||||||| ||||| || |||||||||||||| ||||||||  ||| |||||||  ||  |  | || ||| | ||   |  ||  |       | |  ||| ||     |  ||||  |||    | |   |||  |  || ||  |   | | 
GAATTGGCTCAAACTAACACCGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTTCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggatccagattcacagctctacactgcttaaatgaagcatctctatctatgattggaatcaattttactgccca---gagacattacttgcctttgttct

upper sequence: GLYMA04G03030.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G049091_T01 (Zea mays), 5'ss of exon 2
GAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcgtactctcaggtttatggtagttgtaattttttgttcatcaatagcagtttcaaaatta--tcaactatt-ggagcaaggacatgatacatcca
||| ||||     |  |  ||| |||||  || || |  || || ||||||||||| ||||| || || ||||||||||| ||||||||  ||| |||||||  || ||  | || ||| ||| |  ||     |  ||| |  |  | ||  |||      |||| |  |  |||     ||||     |  |         
GAGTTGGCACAAACTAACACTGGGAATACACCTAAGAGCTACTCTTTGAATATGTTCAAAGATTTCGTGCCTATGTGTGTTTTCTCCGAATCTAACCAAGgtaggattcagattcacagtttttttttatc---agctttatactgcttaagtgcacgcctgaaatcaagtttactgcccagagccccagccaggcgtgattt

upper sequence: GLYMA04G03030.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g13370.t01 (Vitis vinifera), 5'ss of exon 2
GAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcgtactctcaggtttatg---gtagttgtaattttttgttcatcaatagcagtttcaaaattatcaactattggagcaaggacatga-tacatcca
|| ||| ||||| | |  |||   ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||| || || ||||| |  |||||| ||| || |  | |  | || |     ||| |  ||  | ||||||  | | |     |||| | | | | |  |  |  |     |  |  | | ||| | 
GAAATGACTGGCACTGGGGCTCCTAATATGCCAAAAAGTTACTCCTTGAATATGTTCAAAGATTTTGTTCCTATGTGTGTTTTTTCTGAGACAAATCAAGgtaagagtcatgatttttgtttaaactatgtaatcttatatatttgtt--ttagtgaacttttctatagt-ttattttgtaaattcctgttacaagtccattc-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168092|gb|HO013355.1|HO013355
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|7685262|gb|AW755910.1|AW755910
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298180364|gb|HO025565.1|HO025565
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|192308908|gb|FK002132.1|FK002132
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298192192|gb|HO036274.1|HO036274
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|15202686|gb|BI425532.1|BI425532
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298182088|gb|HO026263.1|HO026263
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAGCATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298167093|gb|HO010532.1|HO010532
EST:     TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
EST: gi|298189623|gb|HO038026.1|HO038026
EST:     TACGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAG                         GTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC
genomic: TATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGgtgagaatcg ... tgacttttagGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGC