1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCTGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattttttttattacccaagtttggtaagtgttggtttgtttttgggtattcaaccttttttttttctatgttgattttcag
species | Glycine max |
transcript | GLYMA04G02100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|213613848|gb|DB971007.1|DB971007
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|120494410|gb|EH222577.1|EH222577
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|16279077|gb|BI943246.1|BI943246
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTNTAATGCCAGAATATGACCCTGTAGEST: gi|120494718|gb|EH222885.1|EH222885
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|120495724|gb|EH223891.1|EH223891
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|207737927|gb|GD717399.1|GD717399
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATEST: gi|209727706|gb|BW658443.1|BW658443
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAAT
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|120494207|gb|EH222374.1|EH222374
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|192306886|gb|FG999933.1|FG999933
genomic: GAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAGAAGAAGAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAGEST: gi|16282177|gb|BI944877.1|BI944877
genomic: GAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
EST: GAAATTAGTAGCCTATCATG AGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
genomic: GAAATTAGTAGCCTATCATGgtatgcattt ... tgattttcagAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCAGAATATGACCCTGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGATGAGATATCTGATGCGCTTGAAAGGATCATAGCTGGACCTGAGAAGAAAAATGCTGTTGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGgtatgcattttttttattacccaagtttggtaagtgttggtttgtttttgggtattcaaccttttttttttctatgttgattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA