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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGgtaagcggtactctgattcttctctgctcatgtgttttttcatactgcagattcgttctaacaatgggattcaatattccttcattgacttgaacttaaatgttgaactgcag

Basic information

species Glycine max
transcript GLYMA04G01720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01720.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G33640.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGgtaagcggtactctgattcttctctgctcatgtgttttttcatactgcagattcgttctaacaatgggattcaatattccttcattgacttgaacttaaatgttgaactgcag--------
 ||||||||||||||| || | || || ||||| ||||||||||| |||||||||||  |  ||||||||||| | || ||||||||||||||| |  |||||||   ||    ||  | |   | | | |  | | |    | |   | | | |||||     |   ||     ||  ||      | ||   | || |  ||| |              
TGTATTTTTCTTGCTAACTGTCGCTTACTATGCCTTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCTTTCCTGgtaagacctaaaacgaaacattgttacac-taagctctcagttgcattaaacttgttctttatctcacatctctcatcactatggcaatttattcatagagtttgcataatgattttacag

upper sequence: GLYMA04G01720.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0122g00920.t01 (Vitis vinifera), 5'ss of exon 2
AGTATTTTTCTTGCTATCTATAGCATATTATGCTTTCTTTGCTCCTTTTCTTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGgtaagcggtactctgattcttctctgctcatgtgttttttcatactgcagattcgttctaacaatgggattcaatattccttcattgacttgaacttaaatgttgaactgcag
||| ||||||||||||||| | |||| |||||| || |||||||| || ||||| ||||| |||||||||||| |||| ||  ||||||| ||| | |||||||     |||  |    |  | | || ||    ||||||| | |     |   || || |      ||| | ||||  |  |   | ||  ||||  |             
AGTCTTTTTCTTGCTATCTGTCGCATTTTATGCCTTTTTTGCTCCCTTCCTTGGGAAGGATATCTATGAATATGTGGCAATCAGTGTTTATTCTTTCTTGgtaaata-cacttgggccttagttttcttattaactttttcaaagtt----tctcttttatctgccttatttattattgttcaa---atttctactttcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395855|gb|EV265732.1|EV265732
EST:     TTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTG                         GCTCTCTCCGTGTTCTTTCTTTATGTTCGATGCACTGCCATTGATCCTGCT
genomic: TTGGAAAGGACATCTATGAATATTTGGCTATTGGTGTTTACTCTGTATTGgtaagcggta ... tgaactgcagGCTCTCTCCGTGTTCTTTCTTTATGTTCGATGCACTGCCATTGATCCTGCT