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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTCAAAGCAAAATTCAAAAGCCTCCGAAAAACCTGATTACATTCATGTCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagtaacctttttttttttttttgttctttctttctcttcaatgcatttctctctctagattttgcttctaggatagtaaagtaatcattctatttcggtgtttatgcag

Basic information

species Glycine max
transcript GLYMA04G01400.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522813|gb|BU081624.1|BU081624
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: gi|33389906|gb|CA853113.1|CA853113
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: gi|22522891|gb|BU081702.1|BU081702
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: gi|13125350|gb|BG315920.1|BG315920
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: gi|10847455|gb|BF071548.1|BF071548
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: gi|19348569|gb|BM893101.1|BM893101
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
EST: gi|13180919|gb|BG352259.1|BG352259
EST:     TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGA                         GTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA
genomic: TCCGAGCACGTCGGGGCCAAGCCACCGATAGTCATAGCTTAGCCGAAAGAgtgagtagta ... gtttatgcagGTTAGAAGGGAAAAAATTAGTGAGAGAATGAACTATTTGCAAGATTTAGTA