Sequence
atgc intronic sequence ATGC exonic sequenceGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGgtgctgattatccaatttgcttgctttcttgtactcgctcacaaattgctgtgcttatgtttattatacaatgcag
Basic information
species | Glycine max |
transcript | GLYMA04G00350.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G00350.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G44270.2 (Arabidopsis thaliana), 5'ss of exon 9
GCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGgtgctgatt-atccaatttgcttgctttc---ttgtactcgctcacaaattgctgtgcttatgtttattatacaatgcag
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GCATTTACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGTTCATCAAAGATTTGGAAAGAATAAGgttctttctcaacccttttgtttagtatccgctagaatgaaataagaaaactagagatctctaacttacacaaagtgcag
upper sequence: GLYMA04G00350.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g00440.t01 (Vitis vinifera), 5'ss of exon 8
GCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGgt----gctgattatccaattt-------gcttgctttcttgtactcgctcacaaattgctgtgcttatgtttattatacaatgcag------------------------------------------------------
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GCATTTATTCTCCAAACGCATATCGTGGTTTTGCTCGTGAGTTCATTAAAGATTTGGAAAGGATCAGgttgttgcctttgacactatttcagcagtgattggcatcacatagttcatgaaataatgctgttttcctgctt-ttgtagactttcacttgatgctgtcagctattttcattttgacacctttccggttggttcattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193556231|gb|FK511454.1|FK511454EST: GCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAG ACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTC
genomic: GCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGgtgctgatta ... tacaatgcagACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGgtgctgattatccaatttgcttgctttcttgtactcgctcacaaattgctgtgcttatgtttattatacaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA