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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaactcctctgcttcttaattctcatattaatttatattctatatttccatagctagtatttggtgggtcatcaatatcgttgctaatcctttgtttcgcag

Basic information

species Glycine max
transcript GLYMA04G00200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208257927|gb|GE054500.1|GE054500
EST:     TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         ATTGAAGCTGAAAGCCATTGTACAAGTCAAA
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAA
EST: gi|207779367|gb|GD751625.1|GD751625
EST:     TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGA
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGA
EST: gi|192297484|gb|FG989519.1|FG989519
EST:     TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
EST: gi|298181686|gb|HO025861.1|HO025861
EST:     TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
EST: gi|208083021|gb|GD882203.1|GD882203
EST:     TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         AATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCA
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagA-TTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCA
EST: gi|298173640|gb|HO016976.1|HO016976
EST:     TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
EST: gi|298195373|gb|HO039204.1|HO039204
EST:     TGAGGCTTTTCACAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCT                         ATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG
genomic: TGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaac ... tgtttcgcagATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTgtaacttaactcctctgcttcttaattctcatattaatttatattctatatttccatagctagtatttggtgggtcatcaatatcgttgctaatcctttgtttcgcag

- - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - -  GCAGCT