Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGAGCCAGGCGAGGAGAGGGACCGACTTTAGTAGAATGCGAGACCTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGgtgagcctttacattatgctttatttttttagagtctacttcagttatgttgtttattttgtagtaaactagatttgaacctctgggttgcctggggatc...
Basic information
species | Glycine max |
transcript | GLYMA03G42190.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G42190.1 (Glycine max), 5'ss of exon 2
lower sequence: AT1G01090.1 (Arabidopsis thaliana), 5'ss of exon 2
GAAAGAGCCAGGCGAGGAGAGGGACCGACTTTAGTAGAATGCGAGACCTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGgtgagcctttacattatgctttatttttttagagtctacttcagttatgttgtttattttgtagtaaactagatttgaacctctgggttgcctggggatc
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ACTAGAGCTAGAAGAGGAGAAGGTCCAACCTTGGTTGAATGTGAGACTTATAGATTCAGAGGACACTCCTTGGCTGATCCCGATGAGCTCCGTGATGCTGgtaaatatcgacttc---cttctgcttcttgatgcttgtactgattatctaa---gggttgaaacaaccttctctttaatttgaatttttttttgcag--
upper sequence: GLYMA03G42190.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0048g02580.t01 (Vitis vinifera), 5'ss of exon 2
GAAAGAGCCAGGCGAGGAGAGGGACCGACTTTAGTAGAATGCGAGACCTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGgtgagcctttaca-tta--tgctttatttttttagagtctacttcagttatgttgtttattttgtagtaaactagatt-tgaacctctgggttgcctggggatc
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CAAAGGGCTAGGAGAGGAGAAGGACCAACTCTGGTGGAATGTGAGACATATAGGTTTAGAGGACACTCTTTGGCTGATCCTGATGAGCTCCGTGACCCTGgtaagcagttagaattaattgtcttgccttgtttcgaatta-tccagttgtgat-cttagtttccattaattttgatgatttttctgcctattgatttgtga--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31470267|gb|CD412235.1|CD412235EST: TAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTG CTGAGAAGGCGCATTATGCCGGTAGGGATCCCATCTCTGCACTGAAGAAAT
genomic: TAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGgtgagccttt ... gctttcacagCTGAGAAGGCGCATTATGCCGGTAGGGATCCCATCTCTGCACTGAAGAAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGAGCCAGGCGAGGAGAGGGACCGACTTTAGTAGAATGCGAGACCTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGgtgagcctttacattatgctttatttttttagagtctacttcagttatgttgtttattttgtagtaaactagatttgaacctctgggttgcctggggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT