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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatgttttttgtatattaattttagcaatttcttagatgaatcatgaatttggtacttgacatgcaatattctatgctaaataaggagctaaat...

Basic information

species Glycine max
transcript GLYMA03G41760.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41760.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g01080.t01 (Vitis vinifera), 5'ss of exon 2
GAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatgttttttgtatattaattttagcaatttcttagatgaatcatgaatttggtacttgacatgcaata-ttctatgctaaataaggagct-aaat---
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GAGAATTCCAAGGTGTCCAAGAACATGTCTCAGCGGCATTATACATATCCTGTACTGGCCTACATAACTCCCTGgtatgctttccttttagcctgaatgcatttggaacat-tgagatatg----gaatactacaattatggtttaatggttctgattaaagcaaggttctcaaatttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6724712|gb|AW309045.1|AW309045
EST:     TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTG                         GAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
genomic: TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatg ... actatgacagGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
EST: gi|298196953|gb|HO041696.1|HO041696
EST:     TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTG                         GAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
genomic: TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatg ... actatgacagGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
EST: gi|192307067|gb|FK002705.1|FK002705
EST:     TCGTCTCAGCGCCATTATACTTATCCTGTGCATGGCTACATTACTCCCTG                         GAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
genomic: TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatg ... actatgacagGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
EST: gi|298169270|gb|HO020630.1|HO020630
EST:     TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTAC-CCCTG                         GAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
genomic: TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatg ... actatgacagGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
EST: gi|298176670|gb|HO026791.1|HO026791
EST:     TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTG                         GAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA
genomic: TCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGgtaatttatg ... actatgacagGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACA