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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGgttaaactcctgcctttggtgcttaatgtgttaccaggtcttcaggattgagtttgtatacccatttctatgacaaaatgactgtgaaatgtatttctct...

Basic information

species Glycine max
transcript GLYMA03G41200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0036g00370.t01 (Vitis vinifera), 5'ss of exon 2
GGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGgt--taaactc--ctgcctttggtgcttaatgtgttaccaggtcttcagg--attgagtttgtatacccatttctatgacaaa-atgactgtgaaatgtatttctct
||||||||||||||| |||||||| || ||||| ||  |||| || ||  || | |||||| |||| |||||||| || |||||||||||||||||||||||   |||||    || |  | ||  || || |  ||||     |  | |   |||||||  |||   |   ||||  ||    | || |||  |   ||       
GGGAATGAATGACAGGGGAGTTTCTTATACATTCGGCCCTGACAAAGTGACAGAGTTTCTTGAGAAGCATGATCTGGACCTTGTTTGTCGTGCTCATCAGgtatcaaacttgattgtcagtagttgtttatttcatacctatattataagcagttgagttcatatcatctactctactacttgtaggattgtagagaata-------

upper sequence: GLYMA03G41200.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S22_185V6.1 (Physcomitrella patens), 5'ss of exon 3
GGGAATGAATGACAGAGGAGTTTCATACACATTTGGTGCTGATAAGGTCTCACAATTTCTTCAGAAACATGATCTTGATCTTGTTTGTCGTGCTCATCAGgttaaactcctgcctttggtgcttaatgtgttaccaggtcttcaggattgagtttgtatacccattt-ctatgacaaaatg-actgtgaaatgtatttctct------
||||   |||||| |||||||||| |||||||||||| | |||| ||||||  | ||||| || ||||||||  | |||||| | || || || ||||| ||       |||   |     ||  |||  ||||    | |||    ||||    || ||  ||| |  | | |  ||||  | |||   |  || |  |        
GGGAGATAATGACCGAGGAGTTTCCTACACATTTGGTCCAGATACGGTCTCTGAGTTTCTCCAAAAACATGACTTGGATCTTATCTGCCGAGCCCATCAAgta------ctgttatccacact--atgaattactcactgttctaatttgaaagcgtctaatcatgtgttctaatgaaatatattgttgcacttagtcatgcctgaag