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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag

Basic information

species Glycine max
transcript GLYMA03G40720.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttgaacaaacatgtgttatta-tgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttatt-ttttttag
| ||||| ||||| |||||||||||||| || || |||||||||||||||||||| || ||||||||| | ||||||||  | ||||||||||| ||||||||    |   | ||        |  | || ||| ||| |  |   |  || |    |   |||   ||      ||||   || | | | ||     | ||  |  |  ||
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtccggctctctcttttttttttacatatttttactgttatatctca--gcttagcctgagctt---gttttatccatatcaattcatttgttacaactaatggtcctacag

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaat-tgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag----------------------------------------
| ||||| ||||||||||| || ||||| || || |||||||||||||||||||| || || |||||| | ||||||||  | ||||||||||| ||||||| ||  ||     ||||| || |  |   |  ||| ||||  | ||  || |  |    ||     |   ||    ||||    | | ||||  | |  ||||  |                                         
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgt-atatat-----acaaatatat--tgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgat----gctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 2
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
| |||||||| ||||||   || ||||| || |||||||| || || || |||||||| ||||| |||||||||||||| |||||||||||  ||||||||| | | |         |   ||| || ||  ||   |  || ||      ||  || | |        || | |  |||  | | ||||| ||||  |||      
GTATGGGTTTTATCCAGAGTAATCACTCTGTGATTATGTATAATAATACTATGATTAGTTTCAATATGATTGAGGCTGCTAGGATCAATGGGATTAAGAGgttagtta--------gattttgttttcttcggtt-ttcgcagtt------tacggtttcttaaaacaagttaaaaagat--tggattttttgtttgctttag----

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EDP09235 (Chlamydomonas reinhardtii), 5'ss of exon 3
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaac--aaacatgtgttattatgtcactttcaattgcatgat-atagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
    ||  | |      |   | |||  | |||   ||  |  | |||   ||    || |   | | ||  || |   |    ||  |  |  |        |  |  |  || |     |  | |||      |      |  || | || | |  | ||    |  |    ||   ||  || | | ||       | |      | 
----GGTGTGCGAGGGCTGTGAGCACGTGTTCAACCTGGCCGCCGACA---TGGGCGGCATGGGCTTCATCCAGTCCAACCAC-TCCGTCATCATGTACAACAACACGgtgcgagccggggccggggttgcgggctttgggccggttacctggttacgggctgggcgg-gttaccaggttgtcccgtctgttggaaagcagtgcggcga-

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgt---cattcattttgaacaaacatgtgttattat-gtcactttcaattgcatgatatagtcttt--atgtcgccg-tcata-gtgatccttgttttttggtttattttttttag
| ||||| |||||||||||||| ||| | ||||||||||||||||| |||||||| |||||||||||| |||| ||  |  | |||||||||||    ||||      || | |    |   |   | |||   | | || || ||  |   |  | | |  ||   | ||| | | | ||  |  |||  ||||| |                 
GCATGGGCTTCATCCAGTCCAATCACGCTGTCATTATGTACAACAATACCATGATCAGCTTCAACATGCTTGAAGCCTCACGCATCAATGGTGTCTCTAGgtgcatgctcctctctgcccttccaattttaccttagccatttccagctctttattcttgctttcgaaggtctctgcttatgtgcaatctctgtttctct---------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
| ||||||||||| |||||||||||| | || || |||||||||||||||||||| ||||| |||||| | ||||| ||  | |||||||| ||     |||     |   |   |       | || ||   || ||  |  | ||| | | | |   || | |   ||  | |   |  |    ||     |  || ||| || |
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccc----cttctttttgcctctctccctctcgca-gctctggatcttctttt--cgaaaaaaaaacacacagttaacaatgaatgtttctttg

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtc-gccgtcatagtgatccttgttttttggtttattttttttag-
| ||||| ||||||||||| |||||| | |||||||||||||||||||||||||| || ||||||||| | || || ||  | ||||| |||||||   |||      | | | |      ||  || || || || |  || ||    ||| |   |||  | || ||| | |  | ||   |||||| ||   ||  |  ||     
GTATGGGCTTCATCCAGTCTAACCACGCCGTCATTATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCCGCTCGCATCAACGGTGTTACCCGgtgcgcgctctcgca-----gtgctttctt-tgccattaccagtt---cgattttcacttcgtctctgccattagtgggaattttgtttcttttattcctaattgcgtt

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37016 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
||||||||||||||||||| || |||||||||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||  |  ||| |         | | || ||  |  | |||  |  ||    | |    |||   | || |                                     
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgt-gtggattct---------tcttttgttccgagaatttgga--gctcacttttccttttggcttgcag-------------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
| ||||| |||||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || |||||||      |  ||     |  |   |  |        |||  |   ||   | | |  |   |  |                                         
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag---------------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ37510 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
||||||||||||||||||| || |||||||||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||    |||| | ||       |  |  ||   |  ||| ||||  ||      |  ||                                                   
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtggattcttcttttggttccgagaatttggagctcattttccttt-tggcttgcag---------------------------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ33664 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
||||||||||||||||||| || ||||| |||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||  |  ||| |           | || || ||  | |||  |  ||    | |    |||   | || |                                     
GGATGGGTTTCATCCAGTCGAATCACTCAGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgt-gtggattctt--------ctttttgttctgagaatttgga--gctcacttttccttttggcttgcag-------------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10353 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
| ||||| |||||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |     |      |  ||| || | || |    | ||| |      | ||| | | | | | ||  ||                               
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttgga--gctcactctctctcttggcttc-cag-------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ18599 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
| ||||| |||||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || ||||||| || || || ||||      |     |      |  ||| || | || |    | ||| |    |   ||||| | | ||   ||                                  
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAACGGAGTCAAAAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag---------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
| ||||| |||||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |  ||        |  ||| || | || |    | ||| |    |   ||||| | | ||   ||                                  
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttc----taagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag---------------------------------

upper sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ34003 (Selaginella moellendorffii), 5'ss of exon 1
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtc---attcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag
||||||||||||||||||| || |||||||||||  | | |||||| |||||||| |||||||||||| | |||||  || | |||||||| || || ||||    |||| | ||       |  |  ||   |  |||||||   ||      |  ||                                                   
GGATGGGTTTCATCCAGTCGAATCACTCGGTCATCCTTTTCAACAATACCATGATCAGCTTCAACATGCTCGAGGCCTCCCGAATCAATGGAGTCAAAAGgtgtggattcttctttttgttccgagaatttggagctcacttttccttttggcttgcag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213616469|gb|DB965530.1|DB965530
EST:     ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAG                         GNNNNNNNATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAGCAGTTGGA
genomic: ATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcatt ... ttttttttagGTTTTTTTATGCCTCTAGTGCTTGTATCTATCCTGAATTCAAGCAGTTGGA