Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCATCTCTTTGATCAAACACGCATTCACCAAAGGGGTCACTTTCTTTGATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactaccttttaacagatctgtttcattttaacaaataacaatcaacaatggatgtaagtaacataacattttagttaactctcag

Basic information

species Glycine max
transcript GLYMA03G40680.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325845|gb|FK018067.1|FK018067
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTTAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|192332295|gb|FK025960.1|FK025960
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|4396672|gb|AI495669.1|AI495669
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|298168820|gb|HO009750.1|HO009750
EST:     ATTCTGCAGATTTTTATGGAGCACGCGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|192334362|gb|FK025539.1|FK025539
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|151410675|gb|EV280490.1|EV280490
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|192314627|gb|FK006385.1|FK006385
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|38192837|gb|CF922043.1|CF922043
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|298165604|gb|HO011653.1|HO011653
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|14125225|gb|BG789655.1|BG789655
EST:     AATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: AATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|151411705|gb|EV281516.1|EV281516
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|13481916|gb|BG511259.1|BG511259
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|12773659|gb|BG238586.1|BG238586
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|151398884|gb|EV268755.1|EV268755
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|192298309|gb|FG992099.1|FG992099
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|42722439|gb|CK768339.1|CK768339
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|192329671|gb|FK022937.1|FK022937
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|7146862|gb|AW508784.1|AW508784
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|192314626|gb|FK006384.1|FK006384
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|254315362|gb|GR825171.1|GR825171
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
EST: gi|298181942|gb|HO026117.1|HO026117
EST:     ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAG                         GCTCTCAGGGGCTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG
genomic: ATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactacc ... taactctcagGCTCTCAGGGACTTTCCTCGAGATCAATTTCAGATTGCCACAAAGTTTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGCATCTCTTTGATCAAACACGCATTCACCAAAGGGGTCACTTTCTTTGATTCTGCAGATTTTTATGGAGCACGTGCCAATGAAGTTTTGGTCGGAAAGgttaactaccttttaacagatctgtttcattttaacaaataacaatcaacaatggatgtaagtaacataacattttagttaactctcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA