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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTTGTTGTTGAGTCGCGGTAAAAGCTCGCATCTTCTAGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGgtaaagtttttagcaccaactagttgtctaatgataatgaggataaaatgtttgacgctgtatttatcattgtctaattagttgcaacccaatgaaagttattttgtacttagagcaaggtatacataagtgatgttacataattattgcag

Basic information

species Glycine max
transcript GLYMA03G40290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 2
TCATTTTGTTGTTGAGTCGCGGTAAAAGCTCGCATCTTCTAGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGgtaaagtttttagcaccaactagttgtctaatgataatgaggataaaatgtttgacgctg-tatttatcattgtctaattagttgcaacccaatgaaagttattttgtacttagagcaaggtatacataagtgatgttacataattattgcag
| |||||| ||   ||| | || | |||||| |||||||| || |||||||||||||||||||||||||| ||||| || || || ||||||||||| ||||||   |   |   |||  || |    |          || || |  | ||| | |||| | || |     || |   |||||   ||      |    | ||   |  ||                                         
TTATTTTGCTGACAAGTGGGGGAAGAAGCTCACATCTTCTGGTCTTCAGTGAAGATCTTTTCTTTATATATCTTCTTCCGCCCATTATATTTAATGCTGGgtaagtctagcattcccatttaatctcttgg-------aagaatgatttatttaatgctggtcttcagtgaagtttttatagttcttact-----agtactcttgaatgatt-----------------------------------------

upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S169_48V6.1 (Physcomitrella patens), 5'ss of exon 2
TCATTTTGTTGTTGAGTCGCGGTAAAAGCTCGCATCTTCTAGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCACCTATCATATTTAATGCCGGgtaaagtttttagcaccaactagttgtctaatgataatgaggataaaatgtttgacgctgtatttatcattgtctaattagttgcaacccaatgaaagttattttgtacttagagcaaggtatacataagtgatgttacataattattgcag
|  | ||| | |  ||    ||| || | || ||| |||| |  ||   |||||| |||||||| ||||||||||| |||||||| || || ||||| |||||  |||      | | ||| |   |||| || | | ||   | || |     | | |   || |  ||| |||| ||| |  | | |   ||   || |                                                   
TAGTGTTGATTTCAAGCAAAGGTCAAGGTTCTCATATTCTGGAGTTTGATGAAGAGCTTTTCTTCATATACCTTCTTCCACCTATAATCTTCAATGCTGGgtat-gttaacgttatccacttgacatctattgctgaagaaactgaagtagagcaggatagcttcag-attctcta-ttattgtcgatcttgtgttggtgacc-------------------------------------------------