1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACGGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATGgtactttttactttcataacctcatcttttgcttttgaagataaagaaagtcaaaagaagaaaatagttggaatttagtctcaactcaacacttcaggcc...
species | Glycine max |
transcript | GLYMA03G38830.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGCTTAACGATG TTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAAGAGTTGATAEST: gi|120533767|gb|EH261900.1|EH261900
genomic: CTTGCTTAACGATGgtacttttta ... ttatgtacagTTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAAGAGTTGATA
EST: GGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATG TTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAEST: gi|208229180|gb|GE022458.1|GE022458
genomic: GGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATGgtacttttta ... ttatgtacagTTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAA
EST: GGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATG TTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAAGAGTTGATAEST: gi|193609990|gb|FK562432.1|FK562432
genomic: GGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATGgtacttttta ... ttatgtacagTTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAAGAGTTGATA
EST: GGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATG TTCCTAGTGAATATTATGCCCAATTAGATGCAACTGGAAAA-GAGTTGATA
genomic: GGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATGgtacttttta ... ttatgtacagTTCCTAGTGAATATTATGCTCAATTAGATGCAACTGGAAAAAGAGTTGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCCGCTGCAGAAGATGTCGCACATATGTGAATCCTTATATGACATTTACGGAAGCTGGAAGAAAGTTCCGTTGCAACATCTGTACCTTGCTTAACGATGgtactttttactttcataacctcatcttttgcttttgaagataaagaaagtcaaaagaagaaaatagttggaatttagtctcaactcaacacttcaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA