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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACATGCTGTTCGGGAAGCGCGGCAAGAGTGGCTTAGTTGCTCTCAATTTAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgccgaaaaccaaaaccaaaacttttcgatatttcgtctgaactgtatgtgtattggattgaactttttgtag

Basic information

species Glycine max
transcript GLYMA03G38810.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298192506|gb|HO036588.1|HO036588
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|7588547|gb|AW704270.1|AW704270
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|213596238|gb|DB960170.1|DB960170
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|298186643|gb|HO037276.1|HO037276
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|298181603|gb|HO025778.1|HO025778
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAAGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|151395479|gb|EV265356.1|EV265356
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|10846293|gb|BF069216.1|BF069216
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCANGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|298186900|gb|HO033999.1|HO033999
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|120495312|gb|EH223479.1|EH223479
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|208082005|gb|GD879507.1|GD879507
EST:     CGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: CGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
EST: gi|151407958|gb|EV277773.1|EV277773
EST:     TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAG                         GTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG
genomic: TAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgc ... ctttttgtagGTTGAGATGGGAGGTTGCAAGGCGCCTATAACCACTTTTATTGTCGAACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACATGCTGTTCGGGAAGCGCGGCAAGAGTGGCTTAGTTGCTCTCAATTTAGACATAGCTCAAGTCGCCGAGTTCGTCAAAGCACGCCTCGGCGTTGAGgtgtgatcgccgaaaaccaaaaccaaaacttttcgatatttcgtctgaactgtatgtgtattggattgaactttttgtag

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