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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgcattactcgttttcgtgcatgttcgtttgcgtttcgtgtttgtgcatgttcgttcttctaacggcgaccgaacgaagccttgcag

Basic information

species Glycine max
transcript GLYMA03G38340.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213588977|gb|DB971514.1|DB971514
EST:     AACTGAAGCNNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG                         GTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
genomic: AACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
EST: gi|213610669|gb|DB961144.1|DB961144
EST:     AACTGAAGCNNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG                         GTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
genomic: AACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
EST: gi|209724628|gb|BW677721.1|BW677721
EST:     AACTGAAGCNNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG                         GTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
genomic: AACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
EST: gi|192304983|gb|FG996115.1|FG996115
EST:     AACTGAAGCNNNNNNNGCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG                         GTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
genomic: AACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
EST: gi|192330459|gb|FK022646.1|FK022646
EST:     AACTGAAGCNNNNNNNNCTGAATCCAAAAAACCTGCCGCTAAGCAATCCG                         GTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC
genomic: AACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgca ... agccttgcagGTGGGAAGAAGAAGGAGGTGAAGAAGGAGACTGGCTTAGGTCTCACGCATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCAGGTGCTCGTCCTTCACGATGGCGGGAACTGAAGCAAAAAAAACTGAATCCAAAAAACCTGCCGCTAAGCAATCCGgtaattcgcattactcgttttcgtgcatgttcgtttgcgtttcgtgtttgtgcatgttcgttcttctaacggcgaccgaacgaagccttgcag

- - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA